RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 ALPK2Q86TB3 2170 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 DPRXA6NFQ7 191 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 CCDC154A6NI56 674 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 SNUPNO95149 360 aaKnown RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 PAX1P15863 534 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 IL12AP29459 219 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 APOBEC1P41238 236 aaKnown RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 KCNJ10P78508 379 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 FAPQ12884 760 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 OGFOD2Q6N063 350 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 KIRREL3Q8IZU9 778 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 ARFGAP2Q8N6H7 521 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 PANX1Q96RD7 426 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 WDR55Q9H6Y2 383 aaPredicted RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 BTNL2Q9UIR0 455 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 SPIN1Q9Y657 262 aaPredicted RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 CR1P17927 2039 aa19.06■□□□□ 0.64
USP40-215ENST00000484528 HEATR1Q9H583 2144 aaKnown RBP19.06■□□□□ 0.64
USP40-215ENST00000484528 RAMP1O60894 148 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 CHRM4P08173 479 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 GUSBP08236 651 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 EPHA3P29320 983 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 CDKN1AP38936 164 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 IDH2P48735 452 aaKnown RBP19.05■□□□□ 0.64
USP40-215ENST00000484528 PPA1Q15181 289 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 ZNF672Q499Z4 452 aaPredicted RBP19.05■□□□□ 0.64
USP40-215ENST00000484528 DNAJC14Q6Y2X3 702 aaPredicted RBP19.05■□□□□ 0.64
USP40-215ENST00000484528 GRINAQ7Z429 371 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 MTDHQ86UE4 582 aaKnown RBP19.05■□□□□ 0.64
USP40-215ENST00000484528 ADGRG3Q86Y34 549 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 LRRC34Q8IZ02 419 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 UBE2J2Q8N2K1 259 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 MGARPQ8TDB4 240 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 ZHX1-C8orf76Q96EF9 292 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 SLC38A1Q9H2H9 487 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 EMC3Q9P0I2 261 aa19.05■□□□□ 0.64
USP40-215ENST00000484528 MAGED1Q9Y5V3 778 aaPredicted RBP19.05■□□□□ 0.64
USP40-215ENST00000484528 A0A1W2PP18 115 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 ZNF716A6NP11 495 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 TMCC2O75069 709 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 RAD51DO75771 328 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 DANCRP0C864 163 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 KITP10721 976 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 COX5AP20674 150 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 WDR4P57081 412 aaKnown RBP19.04■□□□□ 0.64
USP40-215ENST00000484528 OR2B6P58173 313 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 TNK1Q13470 666 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 COX20Q5RI15 118 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 ZNF621Q6ZSS3 439 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 SMAP2Q8WU79 429 aaPredicted RBP19.04■□□□□ 0.64
USP40-215ENST00000484528 OIT3Q8WWZ8 545 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 GTPBP3Q969Y2 492 aaKnown RBP19.04■□□□□ 0.64
USP40-215ENST00000484528 OR52E6Q96RD3 313 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 EXOSC3Q9NQT5 275 aaKnown RBP19.04■□□□□ 0.64
USP40-215ENST00000484528 NPAP1Q9NZP6 1156 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 RAB21Q9UL25 225 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 NOSIPQ9Y314 301 aaKnown RBP19.04■□□□□ 0.64
USP40-215ENST00000484528 ABCA1O95477 2261 aa19.04■□□□□ 0.64
USP40-215ENST00000484528 IGKV3D-15A0A087WSY6 115 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 PMS2P2O95744 297 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 PGRP06401 933 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 GGT1P19440 569 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 VEZF1Q14119 521 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 CCDC103Q8IW40 242 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 TRIML2Q8N7C3 387 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 ZNF433Q8N7K0 673 aaPredicted RBP19.03■□□□□ 0.64
USP40-215ENST00000484528 MAPK1IP1LQ8NDC0 245 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 WDR60Q8WVS4 1066 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 APH1AQ96BI3 265 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 MUCL1Q96DR8 90 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 TRNT1Q96Q11 434 aaKnown RBP19.03■□□□□ 0.64
USP40-215ENST00000484528 USB1Q9BQ65 265 aaKnown RBP19.03■□□□□ 0.64
USP40-215ENST00000484528 TRIM2Q9C040 744 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 LIPT1Q9Y234 373 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 GPR45Q9Y5Y3 372 aa19.03■□□□□ 0.64
USP40-215ENST00000484528 TMED7-TICAM2A0A0A6YYA0 188 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 TMEM120BA0PK00 339 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 INAFM1C9JVW0 142 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 OVOL3O00110 214 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 PTNP21246 168 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 NTF4P34130 210 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 CLEC12BQ2HXU8 276 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 PGGHGQ32M88 737 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 FBXW9Q5XUX1 488 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 AP1ARQ63HQ0 302 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 SPATA19Q7Z5L4 167 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 PIGXQ8TBF5 258 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 ZBTB18Q99592 522 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 SLC6A13Q9NSD5 602 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 TMED7Q9Y3B3 224 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 HDGFL3Q9Y3E1 203 aa19.02■□□□□ 0.64
USP40-215ENST00000484528 A0A1W2PR80 420 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 TMEM72A0PK05 275 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 AGAP5A6NIR3 686 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 OR5H1A6NKK0 313 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 CCT8L1PA6NM43 557 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 ABCD4O14678 606 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 HDAC3O15379 428 aa19.01■□□□□ 0.63
USP40-215ENST00000484528 NR2F1P10589 423 aa19.01■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms