RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 Q6ZSR3 168 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 FCRLAQ7L513 359 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 HDDC2Q7Z4H3 204 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 ACOT1Q86TX2 421 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 TMEM25Q86YD3 366 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 BEST3Q8N1M1 668 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SPATA6LQ8N4H0 392 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 TEX45Q8NA69 505 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NECAP1Q8NC96 275 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 PAPD5Q8NDF8 572 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 CCDC112Q8NEF3 446 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 OR2L5Q8NG80 312 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 OR5T2Q8NGG2 359 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 OR6Q1Q8NGQ2 317 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 OR52N1Q8NH53 320 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 OR10J5Q8NHC4 309 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RNF133Q8WVZ7 376 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NR4A3Q92570 626 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 AP3S1Q92572 193 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 PSMG2Q969U7 264 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 ERGIC1Q969X5 290 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC35C1Q96A29 364 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 MTERF3Q96E29 417 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RMND5BQ96G75 393 aaPredicted RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 TIMD4Q96H15 378 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 FAM84BQ96KN1 310 aaPredicted RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 PRAP1Q96NZ9 151 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RBBP8Q99708 897 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 PRRT1Q99946 306 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 RSG1Q9BU20 258 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 ZNF426Q9BUY5 554 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 NAA50Q9GZZ1 169 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 TPK1Q9H3S4 243 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 ABCB9Q9NP78 766 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 PLEKHJ1Q9NW61 149 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 GID8Q9NWU2 228 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 C2orf42Q9NWW7 574 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 CISD1Q9NZ45 108 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 PILRAQ9UKJ1 303 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 IKZF2Q9UKS7 526 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.66□□□□□ -1.82
VPS41-212ENST00000482217 NPIPA1Q9UND3 350 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 DIMT1Q9UNQ2 313 aaKnown RBP3.66□□□□□ -1.82
VPS41-212ENST00000482217 SLC6A5Q9Y345 797 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 FADS3Q9Y5Q0 445 aa3.66□□□□□ -1.82
VPS41-212ENST00000482217 TAF1LQ8IZX4 1826 aa3.65□□□□□ -1.82
VPS41-212ENST00000482217 MAP3K5Q99683 1374 aa3.65□□□□□ -1.82
VPS41-212ENST00000482217 PTPRUQ92729 1446 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TRAV18A0A075B6X5 111 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 IGLV5-39A0A0G2JS06 123 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TRBV7-9A0A0J9YWB2 115 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TMEM272A0A1B0GTI8 110 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 PRR23AA6NEV1 266 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 DNAJC9-AS1A6NH13 148 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 C17orf105B2RV13 164 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 ERVV-2B6SEH9 535 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 E5RGE8 158 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 K7EN84 100 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 SOCS2O14508 198 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 CHEK1O14757 476 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 CFLARO15519 480 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 SYNGR3O43761 229 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 N4BP1O75113 896 aaKnown RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 PSMG1O95456 288 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 ANP32DO95626 131 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 LDOC1O95751 146 aaPredicted RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 IFNA5P01569 189 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TCRBP04435 133 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 P04436 131 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 IFNW1P05000 195 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 IGF1P05019 195 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 HIST1H2AGP0C0S8 130 aaPredicted RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 XRCC1P18887 633 aaPredicted RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 ME2P23368 584 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 GLRA1P23415 457 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 STX2P32856 288 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 SHMT2P34897 504 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 APOBEC1P41238 236 aaKnown RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 MAGEA5P43359 124 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 OMPP47874 163 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 P2RY1P47900 373 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 RIDAP52758 137 aaKnown RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 TMEM33P57088 247 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 VLDLRP98155 873 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 CDR2Q01850 454 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 OGDHQ02218 1023 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 FAM27E3Q08E93 113 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 ZNF415Q09FC8 603 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 STX4Q12846 297 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TRAF2Q12933 501 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TPBGQ13641 420 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 KLF9Q13886 244 aaPredicted RBP3.65□□□□□ -1.83
VPS41-212ENST00000482217 GABRA6Q16445 453 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 PPP1R3AQ16821 1122 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 HLA-BQ31612 363 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 ACCSLQ4AC99 568 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 TMEM52BQ4KMG9 183 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 BEND3Q5T5X7 828 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 AGAP7PQ5VUJ5 663 aa3.65□□□□□ -1.83
VPS41-212ENST00000482217 CYB5R2Q6BCY4 276 aa3.65□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms