RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TRAPPC4Q9Y296 219 aa10.81□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SLC35A3Q9Y2D2 325 aa10.81□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 HDGFL3Q9Y3E1 203 aa10.81□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 WDR45Q9Y484 360 aa10.81□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SVEP1Q4LDE5 3571 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 A0A096LNT2 108 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OR5H1A6NKK0 313 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CLDN24A6NM45 220 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CLOCKO15516 846 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 NDUFS7O75251 213 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 IGHV4-39P01824 125 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MYZAPP0CAP1 466 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 GGT1P19440 569 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 IDUAP35475 653 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SOAT1P35610 550 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 KCNJ10P78508 379 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CHRNEQ04844 493 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CHI3L2Q15782 390 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PDCD2Q16342 344 aaPredicted RBP10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 DPY19L1Q2PZI1 675 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ANXA8L1Q5VT79 327 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 FBXW9Q5XUX1 488 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OGFOD2Q6N063 350 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ALKBH2Q6NS38 261 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 TNFAIP8L2Q6P589 184 aaPredicted RBP10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 C16orf62Q7Z3J2 963 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 GRINAQ7Z429 371 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CROCCP2Q86T23 111 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ANKRD46Q86W74 232 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 TMCO5AQ8N6Q1 288 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OR4A15Q8NGL6 344 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CCDC115Q96NT0 180 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MUS81Q96NY9 551 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 DPY30Q9C005 99 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 AMBRA1Q9C0C7 1298 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SLC38A1Q9H2H9 487 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MEAF6Q9HAF1 191 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CISD1Q9NZ45 108 aaKnown RBP10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MALT1Q9UDY8 824 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PCDHGB4Q9UN71 923 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SLC25A15Q9Y619 301 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 STAB1Q9NY15 2570 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 FBN3Q75N90 2809 aa10.8□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 RNF223E7ERA6 249 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 FAAHO00519 579 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 TM9SF1O15321 606 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ERLIN1O75477 346 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CYP7B1O75881 506 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ALDOCP09972 364 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 RPS4Y1P22090 263 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ACVR1BP36896 505 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CDKN1AP38936 164 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SLC1A6P48664 564 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MAPK11Q15759 364 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SPANXN4Q5MJ08 99 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 C11orf71Q6IPW1 123 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ZC3HAV1Q7Z2W4 902 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 VPS37AQ8NEZ2 397 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CNOT9Q92600 299 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MUCL1Q96DR8 90 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 RADILQ96JH8 1075 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PPP1R36Q96LQ0 422 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 TRNT1Q96Q11 434 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 BTNL2Q9UIR0 455 aa10.79□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 A0A1W2PP18 115 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 WDR91A4D1P6 747 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 AGAP5A6NIR3 686 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 E7EQL1 145 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ZNF208O43345 1280 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CPSF4O95639 269 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 LBPP18428 481 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 IL12AP29459 219 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CLNS1AP54105 237 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 FOXG1P55316 489 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PPP2R2BQ00005 443 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 GABRA6Q16445 453 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 FAM174BQ3ZCQ3 159 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ATAD3BQ5T9A4 648 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 LRRC74BQ6ZQY2 392 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CCDC103Q8IW40 242 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 CMIPQ8IY22 773 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ZNF100Q8IYN0 542 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 WDR31Q8NA23 367 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MAPK1IP1LQ8NDC0 245 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OR10H5Q8NGA6 315 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PIGXQ8TBF5 258 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PMM1Q92871 262 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 BOD1Q96IK1 185 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SLC35A5Q9BS91 424 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OR11A1Q9GZK7 315 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ADAM19Q9H013 955 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 EMC3Q9P0I2 261 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 MARCOQ9UEW3 520 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 OSGIN1Q9UJX0 560 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 GDF2Q9UK05 429 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 PRDM4Q9UKN5 801 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 B3GALT5Q9Y2C3 310 aa10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 SPIN1Q9Y657 262 aaPredicted RBP10.78□□□□□ -0.68
MSH5-SAPCD1-205ENST00000476085 E9PBE3 544 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms