RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 MTHFD2LQ9H903 347 aaPredicted RBP16.44■□□□□ 0.22
COL7A1-209ENST00000474432 DSPPQ9NZW4 1301 aa16.44■□□□□ 0.22
COL7A1-209ENST00000474432 SLC22A3O75751 556 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 PMS2P2O95744 297 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 IL6P05231 212 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 ZCCHC18P0CG32 403 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 PDK3Q15120 406 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 KRTAP21-3Q3LHN1 58 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 NCMAPQ5T1S8 102 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 NXNQ6DKJ4 435 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 PRSS57Q6UWY2 283 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 DNAJC14Q6Y2X3 702 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-209ENST00000474432 CMIPQ8IY22 773 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 ZNF611Q8N823 705 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 PIWIL2Q8TC59 973 aaKnown RBP16.43■□□□□ 0.22
COL7A1-209ENST00000474432 KISS1RQ969F8 398 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-209ENST00000474432 ZBTB18Q99592 522 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 GSX2Q9BZM3 304 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 NKIRAS1Q9NYS0 192 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 ZIM2Q9NZV7 527 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 OSGIN1Q9UJX0 560 aa16.43■□□□□ 0.22
COL7A1-209ENST00000474432 ZANQ9Y493 2812 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 FAAHO00519 579 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 RFXANKO14593 260 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 HS3ST1O14792 307 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 ARHGEF9O43307 516 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 TFPTP0C1Z6 253 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 TFPIP10646 304 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 ETFAP13804 333 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 PAX1P15863 534 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 COX5AP20674 150 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 IGHV1-2P23083 117 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 IL32P24001 234 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 CSNK2A1P68400 391 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-209ENST00000474432 HPCAP84074 193 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 H3F3AP84243 136 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 GSTA3Q16772 222 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 MRPL2Q5T653 305 aaKnown RBP16.42■□□□□ 0.22
COL7A1-209ENST00000474432 ADAM5Q6NVV9 412 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 BIVMQ86UB2 503 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 P3H2Q8IVL5 708 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 WDR60Q8WVS4 1066 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 HSD17B8Q92506 261 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 PMM1Q92871 262 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 VPS33AQ96AX1 596 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 PERPQ96FX8 193 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 AURKBQ96GD4 344 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-209ENST00000474432 ZNF701Q9NV72 531 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-209ENST00000474432 RLIMQ9NVW2 624 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 HDGFL3Q9Y3E1 203 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 CHST2Q9Y4C5 530 aa16.42■□□□□ 0.22
COL7A1-209ENST00000474432 FN1P02751 2386 aaKnown RBP16.42■□□□□ 0.22
COL7A1-209ENST00000474432 TLN2Q9Y4G6 2542 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 TMED7-TICAM2A0A0A6YYA0 188 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 TMEM72A0PK05 275 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 ZC3H12DA2A288 527 aaKnown RBP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 DPRXA6NFQ7 191 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 LYZL6O75951 148 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 KRT75O95678 551 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 INHBBP09529 407 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 NR2F1P10589 423 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 IMPDH2P12268 514 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 HOXB9P17482 250 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 CCNA2P20248 432 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 MAGEA8P43361 318 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 PTH2RP49190 550 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 CLK1P49759 484 aaKnown RBP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 SLC16A1P53985 500 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 EPS8Q12929 822 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 ALKBH2Q6NS38 261 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 EPGNQ6UW88 154 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 BHLHA15Q7RTS1 189 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 GALNT5Q7Z7M9 940 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 CCDC103Q8IW40 242 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 AKAP1Q92667 903 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 NEUROG1Q92886 237 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 COX4I2Q96KJ9 171 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 ADAM19Q9H013 955 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 TRAPPC4Q9Y296 219 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 TMED7Q9Y3B3 224 aa16.41■□□□□ 0.22
COL7A1-209ENST00000474432 SPIN1Q9Y657 262 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-209ENST00000474432 CDHR4A6H8M9 788 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 UBDO15205 165 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 DNPH1O43598 174 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 ERLIN1O75477 346 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 PGM3O95394 542 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 DBIP07108 87 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 TACR3P29371 465 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 ACAA2P42765 397 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 ANXA11P50995 505 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 POLR2JP52435 117 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 MSANTD1Q6ZTZ1 278 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 YTHDF3Q7Z739 585 aaKnown RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 VRK2Q86Y07 508 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 ZNF433Q8N7K0 673 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 SLC38A5Q8WUX1 472 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 GTF2H4Q92759 462 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 Q96MF0 132 aa16.4■□□□□ 0.22
COL7A1-209ENST00000474432 RSPO3Q9BXY4 272 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-209ENST00000474432 POTEKPQ9BYX7 375 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms