RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 PMS2P2O95744 297 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 S100A3P33764 101 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 PHC1P78364 1004 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 KCNJ10P78508 379 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 CASP8Q14790 479 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 PGGHGQ32M88 737 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 FAM174BQ3ZCQ3 159 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 FBXW9Q5XUX1 488 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 DNAJC14Q6Y2X3 702 aaPredicted RBP17.45■□□□□ 0.38
COL9A3-210ENST00000472880 HMGN2P46Q86SG4 172 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 CROCCP2Q86T23 111 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 ZBTB9Q96C00 473 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 DNAJA3Q96EY1 480 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 SORT1Q99523 831 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 CISD1Q9NZ45 108 aaKnown RBP17.45■□□□□ 0.38
COL9A3-210ENST00000472880 HDGFL3Q9Y3E1 203 aa17.45■□□□□ 0.38
COL9A3-210ENST00000472880 TLN2Q9Y4G6 2542 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 CIB4A0PJX0 185 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 ZNF716A6NP11 495 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 KIAA1324LA8MWY0 1029 aaPredicted RBP17.44■□□□□ 0.38
COL9A3-210ENST00000472880 GPR171O14626 319 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 DNPH1O43598 174 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 RAMP1O60894 148 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 RAD51DO75771 328 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 IGHV3-9P01782 118 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 BGNP21810 368 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 FKBP2P26885 142 aaKnown RBP17.44■□□□□ 0.38
COL9A3-210ENST00000472880 DMTNQ08495 405 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 TRIML2Q8N7C3 387 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 ZNF433Q8N7K0 673 aaPredicted RBP17.44■□□□□ 0.38
COL9A3-210ENST00000472880 MAPK1IP1LQ8NDC0 245 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 ARL5BQ96KC2 179 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 HS6ST2Q96MM7 605 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 CCDC115Q96NT0 180 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 TRAF4Q9BUZ4 470 aaPredicted RBP17.44■□□□□ 0.38
COL9A3-210ENST00000472880 OR11A1Q9GZK7 315 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 SLCO5A1Q9H2Y9 848 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 NPAP1Q9NZP6 1156 aa17.44■□□□□ 0.38
COL9A3-210ENST00000472880 ZANQ9Y493 2812 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 CCT8L1PA6NM43 557 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 CLDN24A6NM45 220 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 SHISA9B4DS77 424 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 HMGN4O00479 90 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 PGM3O95394 542 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 IGHV4-39P01824 125 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 DHRS4L1P0CG22 281 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 CCNA2P20248 432 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 ACVR1BP36896 505 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 HTR3AP46098 478 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 IDH2P48735 452 aaKnown RBP17.43■□□□□ 0.38
COL9A3-210ENST00000472880 CLK1P49759 484 aaKnown RBP17.43■□□□□ 0.38
COL9A3-210ENST00000472880 ANXA11P50995 505 aaKnown RBP17.43■□□□□ 0.38
COL9A3-210ENST00000472880 NME5P56597 212 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 OR2B6P58173 313 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 CHRNEQ04844 493 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 STX3Q13277 289 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 RNF130Q86XS8 419 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 ZG16BQ96DA0 208 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 RADILQ96JH8 1075 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 REG4Q9BYZ8 158 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 MEAF6Q9HAF1 191 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 BARX1Q9HBU1 254 aaPredicted RBP17.43■□□□□ 0.38
COL9A3-210ENST00000472880 BTNL2Q9UIR0 455 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 HAO1Q9UJM8 370 aa17.43■□□□□ 0.38
COL9A3-210ENST00000472880 MRPL33O75394 65 aaKnown RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TP53P04637 393 aaPredicted RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 MAGEA8P43361 318 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TXNL4AP83876 142 aaKnown RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 PLAURQ03405 335 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 KRTAP1-1Q07627 177 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 BEND6Q5SZJ8 279 aaPredicted RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 AP1ARQ63HQ0 302 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 OGFOD2Q6N063 350 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 KLHL17Q6TDP4 642 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TMEM108Q6UXF1 575 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 DTX2Q86UW9 622 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 ADGRG3Q86Y34 549 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 CMIPQ8IY22 773 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 PIAS4Q8N2W9 510 aaPredicted RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 OR52N5Q8NH56 324 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TRNT1Q96Q11 434 aaKnown RBP17.42■□□□□ 0.38
COL9A3-210ENST00000472880 PANX1Q96RD7 426 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 KCNK9Q9NPC2 374 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 ASB6Q9NWX5 421 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TAS2R16Q9NYV7 291 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TMEM181Q9P2C4 612 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 MALT1Q9UDY8 824 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 POU2F3Q9UKI9 436 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 CSPG4Q6UVK1 2322 aa17.42■□□□□ 0.38
COL9A3-210ENST00000472880 TMED7-TICAM2A0A0A6YYA0 188 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 PRAMEF27A3QJZ7 478 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 CCDC154A6NI56 674 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 AP3D1O14617 1153 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 SLC16A1P53985 500 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 GNA13Q14344 377 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 SYPL1Q16563 259 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 AGAP6Q5VW22 663 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 CASP12Q6UXS9 341 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 ANKFN1Q8N957 763 aa17.41■□□□□ 0.38
COL9A3-210ENST00000472880 WDR60Q8WVS4 1066 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms