RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 PLAURQ03405 335 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 LIPEQ05469 1076 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 FOXF1Q12946 379 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 VEZF1Q14119 521 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 C8orf82Q6P1X6 216 aaPredicted RBP15.92■□□□□ 0.14
COL7A1-205ENST00000465238 DHRS4L2Q6PKH6 230 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 CHMP1BQ7LBR1 199 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 ZNF550Q7Z398 422 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 CDC20BQ86Y33 519 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 UBQLNLQ8IYU4 475 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 SLC26A7Q8TE54 656 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 NSL1Q96IY1 281 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 NPAS1Q99742 590 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 TMUB1Q9BVT8 246 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 LIME1Q9H400 295 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 ACER3Q9NUN7 267 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 JKAMPQ9P055 326 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 SLC13A4Q9UKG4 626 aa15.92■□□□□ 0.14
COL7A1-205ENST00000465238 ELOVL7A1L3X0 281 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 EEF1E1-BLOC1S5C9J1V9 151 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 EEF1E1O43324 174 aaKnown RBP15.91■□□□□ 0.14
COL7A1-205ENST00000465238 MFN2O95140 757 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 GKN3PP0CG01 181 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 EPXP11678 715 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 CD99P14209 185 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 DNASE1P24855 282 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 PSMA4P25789 261 aaKnown RBP15.91■□□□□ 0.14
COL7A1-205ENST00000465238 IDH2P48735 452 aaKnown RBP15.91■□□□□ 0.14
COL7A1-205ENST00000465238 RAC1P63000 192 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 MERTKQ12866 999 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 SLC25A53Q5H9E4 307 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 MICU2Q8IYU8 434 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 C9orf106Q8NAJ2 232 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 ZFP3Q96NJ6 502 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 PINK1Q9BXM7 581 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 SERINC1Q9NRX5 453 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 NDE1Q9NXR1 346 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 KLHL28Q9NXS3 571 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 PRDM4Q9UKN5 801 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 USP22Q9UPT9 525 aa15.91■□□□□ 0.14
COL7A1-205ENST00000465238 NME4O00746 187 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 AP3D1O14617 1153 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 GSTA4O15217 222 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 SEC14L5O43304 696 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 TPST1O60507 370 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 GCM2O75603 506 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-205ENST00000465238 TMIGD3P0DMS9 266 aaPredicted RBP15.9■□□□□ 0.14
COL7A1-205ENST00000465238 ELK4P28324 431 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 AGFG1P52594 562 aaKnown RBP15.9■□□□□ 0.14
COL7A1-205ENST00000465238 RPS3AP61247 264 aaKnown RBP15.9■□□□□ 0.14
COL7A1-205ENST00000465238 COPZ1P61923 177 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 EPS8Q12929 822 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 CCDC80Q76M96 950 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 TGIF2LYQ8IUE0 185 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 LILRA2Q8N149 483 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 SLC35B4Q969S0 331 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 UCN2Q96RP3 112 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 TM9SF2Q99805 663 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 TUBA1CQ9BQE3 449 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 SPAG4Q9NPE6 437 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 ADA2Q9NZK5 511 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 CHST2Q9Y4C5 530 aa15.9■□□□□ 0.14
COL7A1-205ENST00000465238 FLNAP21333 2647 aaKnown RBP15.9■□□□□ 0.14
COL7A1-205ENST00000465238 ZNF469Q96JG9 3925 aaPredicted RBP15.89■□□□□ 0.14
COL7A1-205ENST00000465238 MED12LQ86YW9 2145 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 GJE1A6NN92 205 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ETV2O00321 342 aaPredicted RBP15.89■□□□□ 0.13
COL7A1-205ENST00000465238 FAAHO00519 579 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ADAM11O75078 769 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 GOSR1O95249 250 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 NTN1O95631 604 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 IFNA14P01570 189 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 OPN1SWP03999 348 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 OPN1LWP04000 364 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 APOBEC1P41238 236 aaKnown RBP15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ACAA2P42765 397 aaKnown RBP15.89■□□□□ 0.13
COL7A1-205ENST00000465238 HTR3AP46098 478 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 CLDN20P56880 219 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 DMTNQ08495 405 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 PDSS1Q5T2R2 415 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 FBXW10Q5XX13 1052 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 C16orf89Q6UX73 402 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 PLEKHM3Q6ZWE6 761 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 TRPM8Q7Z2W7 1104 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 GRINAQ7Z429 371 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ADGRE4PQ86SQ3 457 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 SMYD1Q8NB12 490 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ATP6V1C2Q8NEY4 427 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 RASSF5Q8WWW0 418 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 WNT2BQ93097 391 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ZNF524Q96C55 264 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ALPK1Q96QP1 1244 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 SFXN3Q9BWM7 321 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 ALG2Q9H553 416 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 TMEM185BQ9H7F4 350 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 EVA1AQ9H8M9 152 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 PLEKHA6Q9Y2H5 1048 aa15.89■□□□□ 0.13
COL7A1-205ENST00000465238 B2RBV5 119 aa15.88■□□□□ 0.13
COL7A1-205ENST00000465238 EIF1AYO14602 144 aaKnown RBP15.88■□□□□ 0.13
COL7A1-205ENST00000465238 FRS3O43559 492 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms