RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 CNIH4Q9P003 139 aa9.11□□□□□ -0.95
PTPRD-207ENST00000463477 ZNF223Q9UK11 482 aaPredicted RBP9.11□□□□□ -0.95
PTPRD-207ENST00000463477 SRPK3Q9UPE1 567 aa9.11□□□□□ -0.95
PTPRD-207ENST00000463477 FARSAQ9Y285 508 aaKnown RBP9.11□□□□□ -0.95
PTPRD-207ENST00000463477 TMEM5Q9Y2B1 443 aa9.11□□□□□ -0.95
PTPRD-207ENST00000463477 ERVH48-1M5A8F1 160 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CHST10O43529 356 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 COQ9O75208 318 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 NKX2-2O95096 273 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 LYPD3O95274 346 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ITGB2P05107 769 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 RAB40ALP0C0E4 278 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TSPAN19P0C672 248 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 IMPDH2P12268 514 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 GABRA5P31644 462 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TNFSF8P32971 234 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SLC9A3P48764 834 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CDH11P55287 796 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 BDH1Q02338 343 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 RUNX1T1Q06455 604 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 DNASE1L3Q13609 305 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TRMT12Q53H54 448 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 LIPKQ5VXJ0 399 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 PAQR6Q6TCH4 344 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 HSDL2Q6YN16 418 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 QSOX2Q6ZRP7 698 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 HMGN2P46Q86SG4 172 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SNX29P2Q8IUI4 249 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 GID4Q8IVV7 300 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 NRMQ8IXM6 262 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ARHGEF39Q8N4T4 335 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ZBTB8BQ8NAP8 495 aaPredicted RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 PSD4Q8NDX1 1056 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 OR2T33Q8NG76 320 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CT55Q8WUE5 264 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TTC9Q92623 222 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 UFD1Q92890 307 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 MR1Q95460 341 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 COL26A1Q96A83 441 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 RNF31Q96EP0 1072 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CEP19Q96LK0 163 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 UBL7Q96S82 380 aaPredicted RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 BARHL1Q9BZE3 327 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SMG1Q96Q15 3661 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TRDV1A0A1B0GX56 115 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 J3QRE1 110 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CTDSP2O14595 271 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 NKX2-8O15522 239 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 FGF17O60258 216 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ONECUT2O95948 504 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CD63P08962 238 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SLC35E2P0CK97 266 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SLC1A3P43003 542 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CTBP2P56545 445 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 RPS15P62841 145 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SKP1P63208 163 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 PSPHP78330 225 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 POU6F2P78424 691 aaPredicted RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 MAP4K2Q12851 820 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 GPR50Q13585 617 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 GRM7Q14831 915 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 FLYWCH1Q4VC44 716 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 LCN10Q6JVE6 187 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ZNF613Q6PF04 617 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TMPRSS11FQ6ZWK6 438 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 PIP4P2Q8N4L2 257 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 CSNK1A1LQ8N752 337 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 COX18Q8N8Q8 333 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 POC5Q8NA72 575 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ADAMTS18Q8TE60 1221 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TMEM255BQ8WV15 326 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TM9SF4Q92544 642 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TMCO6Q96DC7 493 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TRMT61AQ96FX7 289 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 TXNDC15Q96J42 360 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 HS6ST2Q96MM7 605 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 KCTD7Q96MP8 289 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SDHCQ99643 169 aaPredicted RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ZNF559Q9BR84 538 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ZNF649Q9BS31 505 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 NDC1Q9BTX1 674 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 LMF2Q9BU23 707 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 PRR14Q9BWN1 585 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ZNF229Q9UJW7 825 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SLC7A7Q9UM01 511 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 GSTK1Q9Y2Q3 226 aa9.1□□□□□ -0.95
PTPRD-207ENST00000463477 MRPS2Q9Y399 296 aaKnown RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 SPIN1Q9Y657 262 aaPredicted RBP9.1□□□□□ -0.95
PTPRD-207ENST00000463477 ATMQ13315 3056 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 UNC119BA6NIH7 251 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 TTC36A6NLP5 189 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 SEC14L5O43304 696 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 AKAP8O43823 692 aaKnown RBP9.09□□□□□ -0.95
PTPRD-207ENST00000463477 DNAJB6O75190 326 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 RCBTB2O95199 551 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 APOA1P02647 267 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 NT5EP21589 574 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 DRD5P21918 477 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 CAPZA2P47755 286 aa9.09□□□□□ -0.95
PTPRD-207ENST00000463477 VSX2P58304 361 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms