RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SDHAF3Q9NRP4 125 aa9.95□□□□□ -0.82
SCN9A-205ENST00000454569 TMEFF2Q9UIK5 374 aaPredicted RBP9.95□□□□□ -0.82
SCN9A-205ENST00000454569 RPH3AQ9Y2J0 694 aaPredicted RBP9.95□□□□□ -0.82
SCN9A-205ENST00000454569 TLN1Q9Y490 2541 aaKnown RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 TNFSF12-TNFSF13A0A0A6YY99 330 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 TMEM72A0PK05 275 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 A6NJY4 79 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 LRRN3E7EW58 273 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 KPNA4O00629 521 aaPredicted RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 CHP2O43745 196 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 SNX4O95219 450 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 IGFBP1P08833 259 aaPredicted RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 ACADSP16219 412 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 PGCP20142 388 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 SLC1A3P43003 542 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 SLC6A8P48029 635 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 MASP1P48740 699 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 MEOX1P50221 254 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 RPP38P78345 283 aaKnown RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 C19orf57Q0VDD7 668 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 DCST1Q5T197 706 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 ULK3Q6PHR2 472 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 ZBTB49Q6ZSB9 765 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 ZER1Q7Z7L7 766 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 RBMXL3Q8N7X1 1067 aaKnown RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 OR10G2Q8NGC3 310 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 OR4K17Q8NGC6 315 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 OR4K5Q8NGD3 323 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 MAGEE2Q8TD90 523 aaPredicted RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 GIPC3Q8TF64 312 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 FEVQ99581 238 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 FAM173AQ9BQD7 235 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 C9orf16Q9BUW7 83 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 ZNF426Q9BUY5 554 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 OSBPL10Q9BXB5 764 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 UBQLN3Q9H347 655 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 EVA1AQ9H8M9 152 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 LRRC42Q9Y546 428 aa9.94□□□□□ -0.82
SCN9A-205ENST00000454569 PCDHGA9Q9Y5G4 932 aaKnown RBP9.94□□□□□ -0.82
SCN9A-205ENST00000454569 A0A087WUJ7 227 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 TMED7-TICAM2A0A0A6YYA0 188 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 FAM166BA8MTA8 275 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 ETV2O00321 342 aaPredicted RBP9.93□□□□□ -0.82
SCN9A-205ENST00000454569 CCNB2O95067 398 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 FAM87AP0C7U9 286 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 GP1BBP13224 206 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 MAKP20794 623 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 ENDOUP21128 410 aaKnown RBP9.93□□□□□ -0.82
SCN9A-205ENST00000454569 CBLP22681 906 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 DPP4P27487 766 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 MSX1P28360 303 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 SHC1P29353 583 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 POLR2IP36954 125 aaKnown RBP9.93□□□□□ -0.82
SCN9A-205ENST00000454569 OMPP47874 163 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 B3GALT5-AS1P59052 145 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 COPZ1P61923 177 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 PPP2R2BQ00005 443 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 LTBQ06643 244 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 MERTKQ12866 999 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 WLSQ5T9L3 541 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 PPP4R4Q6NUP7 873 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 PGBD2Q6P3X8 592 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 YRDCQ86U90 279 aaKnown RBP9.93□□□□□ -0.82
SCN9A-205ENST00000454569 ZDHHC13Q8IUH4 622 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 NRMQ8IXM6 262 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 TMEM239Q8WW34 195 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 GTPBP3Q969Y2 492 aaKnown RBP9.93□□□□□ -0.82
SCN9A-205ENST00000454569 SDCCAG3Q96C92 435 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 ZNF597Q96LX8 424 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 TTTY12Q9BZ98 90 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 OR11A1Q9GZK7 315 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 GABARAPL1Q9H0R8 117 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 ZFP64Q9NPA5 681 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 C8orf4Q9NR00 106 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 RPS6KB2Q9UBS0 482 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 TP53TG5Q9Y2B4 290 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 TMED7Q9Y3B3 224 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 USP24Q9UPU5 2620 aa9.93□□□□□ -0.82
SCN9A-205ENST00000454569 CDC42EP2O14613 210 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 CBR3O75828 277 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 GLSO94925 669 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-205ENST00000454569 RASAL1O95294 804 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 TP53P04637 393 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-205ENST00000454569 ITGB2P05107 769 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 ALPLP05186 524 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 EPHA2P29317 976 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 HSPA13P48723 471 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 SUMO3P55854 103 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-205ENST00000454569 DLX5P56178 289 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 DAG1Q14118 895 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 TMEM44Q2T9K0 475 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 ZIK1Q3SY52 487 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-205ENST00000454569 CMPK2Q5EBM0 449 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 SLC25A53Q5H9E4 307 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 WIPI1Q5MNZ9 446 aaPredicted RBP9.92□□□□□ -0.82
SCN9A-205ENST00000454569 FAHD1Q6P587 224 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 C19orf48Q6RUI8 117 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 IGFL3Q6UXB1 125 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 MBOAT2Q6ZWT7 520 aa9.92□□□□□ -0.82
SCN9A-205ENST00000454569 GALNT5Q7Z7M9 940 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms