RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SEC22CQ9BRL7 303 aa11□□□□□ -0.65
MSH6-204ENST00000445503 RSPO3Q9BXY4 272 aaPredicted RBP11□□□□□ -0.65
MSH6-204ENST00000445503 CLDND1Q9NY35 253 aa11□□□□□ -0.65
MSH6-204ENST00000445503 GLTPQ9NZD2 209 aa11□□□□□ -0.65
MSH6-204ENST00000445503 TBC1D29Q9UFV1 150 aa11□□□□□ -0.65
MSH6-204ENST00000445503 ADAM18Q9Y3Q7 739 aa11□□□□□ -0.65
MSH6-204ENST00000445503 A0A1B0GWA3 101 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 CIB4A0PJX0 185 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 TVP23AA6NH52 213 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 PDCD5O14737 125 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 RDH16O75452 317 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 SLC22A5O76082 557 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 EPPINO95925 133 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 TRAM1Q15629 374 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 OTPQ5XKR4 325 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 ARHGAP11AQ6P4F7 1023 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 APOOLQ6UXV4 268 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 CDRT4Q8N9R6 151 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 OR52R1Q8NGF1 315 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 OR6N2Q8NGY6 317 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 BADQ92934 168 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 SLC25A36Q96CQ1 311 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 SGTBQ96EQ0 304 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 TOX2Q96NM4 488 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 GAL3ST4Q96RP7 486 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 NOX4Q9NPH5 578 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 CYSLTR2Q9NS75 346 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 C4orf51C9J302 202 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 SPINT1O43278 529 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 KRT33AO76009 404 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 TBXA2RP21731 343 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 MNDAP41218 407 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 TNFRSF17Q02223 184 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 GPM6BQ13491 265 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 ZNF680Q8NEM1 530 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 OR4D9Q8NGE8 314 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 PHOSPHO1Q8TCT1 267 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 DERL3Q96Q80 235 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 ARHGDIGQ99819 225 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 PDCD10Q9BUL8 212 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 CCDC86Q9H6F5 360 aaKnown RBP10.99□□□□□ -0.65
MSH6-204ENST00000445503 C11orf49Q9H6J7 331 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 PROS1P07225 676 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 CXCL3P19876 107 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 PRMT2P55345 433 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 LEG1Q6P5S2 330 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 KANSL1Q7Z3B3 1105 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 GALNT6Q8NCL4 622 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 OR2M2Q96R28 347 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 EVA1BQ9NVM1 165 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 MYEF2Q9P2K5 600 aaKnown RBP10.99□□□□□ -0.65
MSH6-204ENST00000445503 GBF1Q92538 1859 aa10.99□□□□□ -0.65
MSH6-204ENST00000445503 IGKV1-8A0A0C4DH67 115 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 POM121BA6NF01 834 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 KHNYNO15037 678 aaKnown RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 ARPC5O15511 151 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 PDGFAP04085 211 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 HOXB2P14652 356 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 NPR2P20594 1047 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 C5AR1P21730 350 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 FBXW4P57775 412 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 SLC22A10Q63ZE4 541 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 RPL13AP3Q6NVV1 102 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 CSNK1A1LQ8N752 337 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ZNF511Q8NB15 262 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 DUSP18Q8NEJ0 188 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP10.98□□□□□ -0.651e-8■■■■□ 21.4
MSH6-204ENST00000445503 TMEM168Q9H0V1 697 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 MTIF3Q9H2K0 278 aaKnown RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 C12orf4Q9NQ89 552 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 CHP2O43745 196 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 NDUFB2O95178 105 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 NDUFS1P28331 727 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 NRG3P56975 720 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 RUNX2Q13950 521 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 TIGD3Q6B0B8 471 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 PATE1Q8WXA2 126 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 TRIM43Q96BQ3 446 aaPredicted RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 KCTD12Q96CX2 325 aaKnown RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 PEX11GQ96HA9 241 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 SERINC2Q96SA4 455 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 DDOQ99489 341 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 IL21RQ9HBE5 538 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 OR2W5A6NFC9 320 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 C11orf98E9PRG8 122 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 SELENOFO60613 162 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 TBX19O60806 448 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ADH1BP00325 375 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 OR8G3PP0DMU2 310 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 PRKACBP22694 351 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 FNTBP49356 437 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ARL4DP49703 201 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 SIRPAP78324 504 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 GAS6Q14393 721 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ATXN7L3Q14CW9 347 aaPredicted RBP10.98□□□□□ -0.65
MSH6-204ENST00000445503 TPRA1Q86W33 373 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 RASGRP3Q8IV61 690 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 NSMAFQ92636 917 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 ARL6Q9H0F7 186 aa10.98□□□□□ -0.65
MSH6-204ENST00000445503 PFDN2Q9UHV9 154 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms