RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 GPR143P51810 404 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 HNRNPFP52597 415 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 MAPK12P53778 367 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 HNRNPH2P55795 449 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 SLC26A5P58743 744 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TNFRSF17Q02223 184 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 FAM27E3Q08E93 113 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 STX3Q13277 289 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 MEP1AQ16819 746 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 UGT3A2Q3SY77 523 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 SPIN4Q56A73 249 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 HHATQ5VTY9 493 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 C18orf63Q68DL7 685 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ZNF324BQ6AW86 544 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 HIST2H2BCQ6DN03 193 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 HIST2H2BDQ6DRA6 164 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 OR52E8Q6IFG1 317 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 RPUSD3Q6P087 351 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 Q6ZS92 163 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 COMMD6Q7Z4G1 85 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TBC1D26Q86UD7 250 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 CUZD1Q86UP6 607 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 RPS19BP1Q86WX3 136 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 PARP16Q8N5Y8 322 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 SLC5A8Q8N695 610 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 IQCF1Q8N6M8 205 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 C1orf52Q8N6N3 182 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TMEM116Q8NCL8 245 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 GJC3Q8NFK1 279 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 B3GNT7Q8NFL0 401 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 OR4K14Q8NGD5 310 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 OR8K3Q8NH51 312 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 OR14A16Q8NHC5 309 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ELP5Q8TE02 316 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 PNPLA2Q96AD5 504 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TM4SF18Q96CE8 201 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TLCD1Q96CP7 247 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 RNF183Q96D59 192 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 C11orf24Q96F05 449 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 VMP1Q96GC9 406 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ZC3HAV1LQ96H79 300 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 RSRC1Q96IZ7 334 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ART5Q96L15 291 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 KCNA7Q96RP8 456 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 CSF3RQ99062 836 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 MRPL1Q9BYD6 325 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 DEFB126Q9BYW3 111 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ACPTQ9BZG2 426 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 GHITMQ9H3K2 345 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 PNO1Q9NRX1 252 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 SDAD1Q9NVU7 687 aaKnown RBP eCLIP2.27□□□□□ -2.056e-6■■□□□ 12.1
VPS13A-208ENST00000423463 NKIRAS1Q9NYS0 192 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ABI3Q9P2A4 366 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 RALYQ9UKM9 306 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 LRP12Q9Y561 859 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 CLCA3PQ9Y6N3 262 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 MDC1Q14676 2089 aaKnown RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 MYO15AQ9UKN7 3530 aa2.27□□□□□ -2.05
VPS13A-208ENST00000423463 ANKRD11Q6UB99 2663 aaPredicted RBP2.27□□□□□ -2.05
VPS13A-208ENST00000423463 TRAV17A0A0B4J275 112 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TMEM120BA0PK00 339 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 A8MUI8 341 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 KRTAP29-1A8MX34 341 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PGRMC2O15173 223 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FGF17O60258 216 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 LDB3O75112 727 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SEC22BO75396 215 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ZFAND5O76080 213 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 AIFM1O95831 613 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TFP02787 698 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PRB1P04280 392 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 UQCRHP07919 91 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ANXA4P09525 319 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NAGAP17050 411 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SRD5A1P18405 259 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CSNK2A2P19784 350 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NR1D1P20393 614 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TIA1P31483 386 aaKnown RBP eCLIP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 CDAP32320 146 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 XKP51811 444 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FOXA1P55317 472 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 MLF1P58340 268 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ABCE1P61221 599 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 MAGOHP61326 146 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 PLIN5Q00G26 463 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HMGCS1Q01581 520 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 FOLH1Q04609 750 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 RAPSNQ13702 412 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 HEPACAMQ14CZ8 416 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 IMPG1Q17R60 797 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SMU1Q2TAY7 513 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TCHHL1Q5QJ38 904 aaPredicted RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 ACER2Q5QJU3 275 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 NDUFAF5Q5TEU4 345 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 TYW3Q6IPR3 259 aaKnown RBP2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SLC48A1Q6P1K1 146 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 SCIMPQ6UWF3 145 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 LINC00696Q6ZRV3 163 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 Q6ZSR9 355 aa2.26□□□□□ -2.05
VPS13A-208ENST00000423463 OR4N5Q8IXE1 308 aa2.26□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 93.6 ms