RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 FBXL2Q9UKC9 423 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 TMED7Q9Y3B3 224 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 SPIN1Q9Y657 262 aaPredicted RBP15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 KCNMB2Q9Y691 235 aa15.56■□□□□ 0.08
CCDC28B-202ENST00000421922 AKAP13Q12802 2813 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 HTR3EA5X5Y0 456 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 ENO4A6NNW6 628 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 EFCAB9A8MZ26 197 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 C1QTNF9BB2RNN3 333 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 SUSD5O60279 629 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 C1QTNF9P0C862 333 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 PRKCAP17252 672 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 TCEA1P23193 301 aaKnown RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 DPP4P27487 766 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 APOBEC1P41238 236 aaKnown RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 EIF1P41567 113 aaKnown RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 DSCR4P56555 118 aaPredicted RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 GPR85P60893 370 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 FOXF1Q12946 379 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 SLC36A3Q495N2 470 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 ARSKQ6UWY0 536 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 MEX3DQ86XN8 651 aaKnown RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 WDSUB1Q8N9V3 476 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 SETD9Q8NE22 299 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 FDCSPQ8NFU4 85 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 TEX47Q8TBZ9 253 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 TFAP2CQ92754 450 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 ZBTB8AQ96BR9 441 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 MRGPRX4Q96LA9 322 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 SIGLEC12Q96PQ1 595 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF426Q9BUY5 554 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF552Q9H707 407 aaPredicted RBP15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 GMPPBQ9Y5P6 360 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 CNTRLQ7Z7A1 2325 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 PCNX3Q9H6A9 2034 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 MPDZO75970 2070 aa15.55■□□□□ 0.08
CCDC28B-202ENST00000421922 LOC100130705A0A1B0GUX0 176 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 UNC119BA6NIH7 251 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 DENRO43583 198 aaKnown RBP15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 TRIM3O75382 744 aaPredicted RBP15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 CBR3O75828 277 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 NEURL1O76050 574 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 SOX14O95416 240 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 HK1P19367 917 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 MST1P26927 711 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 EIF2S3P41091 472 aaKnown RBP15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 GSSP48637 474 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 CTBP2P56545 445 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 INPP5JQ15735 1006 aaPredicted RBP15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 PLPPR5Q32ZL2 321 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 CMPK2Q5EBM0 449 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 C5orf46Q6UWT4 87 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 CD300LDQ6UXZ3 194 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 LINC00114Q6XXX2 140 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 P3H2Q8IVL5 708 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 C8orf59Q8N0T1 100 aaPredicted RBP15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 TM9SF4Q92544 642 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 APOL4Q9BPW4 351 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 KLHDC3Q9BQ90 382 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 TEX12Q9BXU0 123 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 NDEL1Q9GZM8 345 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 KLHL1Q9NR64 748 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 ACACAQ13085 2346 aa15.54■□□□□ 0.08
CCDC28B-202ENST00000421922 APC2O95996 2303 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 KLRC4-KLRK1H3BQV0 150 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 RPS6KA3P51812 740 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 CRISP1P54107 249 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 UCNP55089 124 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ADARB1P78563 741 aaKnown RBP15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 LSM11P83369 360 aaKnown RBP eCLIP15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 PLGLB1Q02325 96 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 IL18R1Q13478 541 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 SLC25A25Q6KCM7 469 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 RASSF6Q6ZTQ3 369 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 TMPRSS11FQ6ZWK6 438 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF227Q86WZ6 799 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 TMEM178AQ8NBL3 297 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 OR52L1Q8NGH7 329 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 FANK1Q8TC84 345 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 HAS2Q92819 552 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 OSTF1Q92882 214 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 DDIT4LQ96D03 193 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ZNF570Q96NI8 536 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 GNRHR2Q96P88 292 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ANKRD60Q9BZ19 345 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 PROK2Q9HC23 129 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ZFP64Q9NPA5 681 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 MEPEQ9NQ76 525 aaPredicted RBP15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 C20orf141Q9NUB4 165 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 TBC1D23Q9NUY8 699 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 TUBA8Q9NY65 449 aaPredicted RBP15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 CHRNA9Q9UGM1 479 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ZMIZ1Q9ULJ6 1067 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 ASPMQ8IZT6 3477 aa15.53■□□□□ 0.08
CCDC28B-202ENST00000421922 TRAV36DV7A0A075B6V5 113 aa15.52■□□□□ 0.08
CCDC28B-202ENST00000421922 A0A0G2JMM0 328 aa15.52■□□□□ 0.08
CCDC28B-202ENST00000421922 A0A1W2PPB8 328 aa15.52■□□□□ 0.08
CCDC28B-202ENST00000421922 A0A1W2PRS3 328 aa15.52■□□□□ 0.08
CCDC28B-202ENST00000421922 A8MVM7 634 aa15.52■□□□□ 0.08
CCDC28B-202ENST00000421922 KIR3DP1A8MWS1 328 aa15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms