RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 CASKO14936 926 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 GOSR1O95249 250 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 YES1P07947 543 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 BMP2P12643 396 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 ATP4BP51164 291 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 CRISP3P54108 245 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 TMEM201Q5SNT2 666 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 GTF2IRD2BQ6EKJ0 949 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 ABLIM2Q6H8Q1 611 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 GTF2IRD2Q86UP8 949 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 CXorf67Q86X51 503 aaPredicted RBP16.93■□□□□ 0.3
SF3A1-202ENST00000411423 PEX5LQ8IYB4 626 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 PIK3IP1Q96FE7 263 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 REXO5Q96IC2 774 aaKnown RBP16.93■□□□□ 0.3
SF3A1-202ENST00000411423 CXXC4Q9H2H0 198 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 PRSS50Q9UI38 385 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 DCTN4Q9UJW0 460 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 TMED7Q9Y3B3 224 aa16.93■□□□□ 0.3
SF3A1-202ENST00000411423 FREM1Q5H8C1 2179 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 TEP1Q99973 2627 aaKnown RBP16.92■□□□□ 0.3
SF3A1-202ENST00000411423 SULT2B1O00204 365 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 FAAHO00519 579 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 PABPC4LP0CB38 370 aaKnown RBP16.92■□□□□ 0.3
SF3A1-202ENST00000411423 TFPIP10646 304 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 IMPDH2P12268 514 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 TACR3P29371 465 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 NTF4P34130 210 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 RASGEF1BQ0VAM2 473 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 SQLEQ14534 574 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 BEND4Q6ZU67 534 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 COMTD1Q86VU5 262 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 SLC43A2Q8N370 569 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 SLC25A43Q8WUT9 341 aaPredicted RBP16.92■□□□□ 0.3
SF3A1-202ENST00000411423 PMM1Q92871 262 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 ADAM19Q9H013 955 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 GP6Q9HCN6 339 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 NPHS2Q9NP85 383 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 A4GALTQ9NPC4 353 aa16.92■□□□□ 0.3
SF3A1-202ENST00000411423 F8P00451 2351 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 UQCRHLA0A096LP55 91 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 CFAP73A6NFT4 308 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 ZNF716A6NP11 495 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 KLF4O43474 513 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 FRS3O43559 492 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 PMS2P2O95744 297 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 LIN52Q52LA3 116 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 DLEU7Q6UYE1 221 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 CCDC103Q8IW40 242 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 STON2Q8WXE9 905 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 FOXC2Q99958 501 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 ACTR6Q9GZN1 396 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 CALML5Q9NZT1 146 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 KLHL9Q9P2J3 617 aa16.91■□□□□ 0.3
SF3A1-202ENST00000411423 PRRC2AP48634 2157 aaKnown RBP16.91■□□□□ 0.3
SF3A1-202ENST00000411423 PRR14LQ5THK1 2151 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 A0A0G2JPF8 293 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HNRNPCL2B2RXH8 293 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HNRNPCL3B7ZW38 293 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HNRNPCL1O60812 293 aaKnown RBP16.9■□□□□ 0.3
SF3A1-202ENST00000411423 RAF1P04049 648 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 THBS1P07996 1170 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HNRNPCL4P0DMR1 293 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 CD53P19397 219 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 PSMB1P20618 241 aaKnown RBP16.9■□□□□ 0.3
SF3A1-202ENST00000411423 DNASE1P24855 282 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 SLC1A3P43003 542 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 POLR2HP52434 150 aaKnown RBP16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HOXC5Q00444 222 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 RNF220Q5VTB9 566 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 CGB2Q6NT52 195 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 SERPINA11Q86U17 422 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 MTDHQ86UE4 582 aaKnown RBP16.9■□□□□ 0.3
SF3A1-202ENST00000411423 RETREG3Q86VR2 466 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 NFKBIDQ8NI38 313 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 CPPED1Q9BRF8 314 aaPredicted RBP16.9■□□□□ 0.3
SF3A1-202ENST00000411423 BCL2L10Q9HD36 194 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 ZNF226Q9NYT6 803 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 HDGFL3Q9Y3E1 203 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 GMEB1Q9Y692 573 aa16.9■□□□□ 0.3
SF3A1-202ENST00000411423 A0A1W2PP18 115 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 PGM3O95394 542 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 ADAP00813 363 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 ARAFP10398 606 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 NCF2P19878 526 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-202ENST00000411423 OR3A2P47893 321 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 CSNK2A1P68400 391 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-202ENST00000411423 BNIP2Q12982 314 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 FADDQ13158 208 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 SELPLGQ14242 412 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 GNA13Q14344 377 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 STK32CQ86UX6 486 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 S100PBPQ96BU1 408 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 MBD6Q96DN6 1003 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 SPATA9Q9BWV2 254 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 GPR52Q9Y2T5 361 aa16.89■□□□□ 0.29
SF3A1-202ENST00000411423 SPIN1Q9Y657 262 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-202ENST00000411423 RAI1Q7Z5J4 1906 aaPredicted RBP16.89■□□□□ 0.29
SF3A1-202ENST00000411423 IGKV3D-15A0A087WSY6 115 aa16.88■□□□□ 0.29
SF3A1-202ENST00000411423 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP16.88■□□□□ 0.29
SF3A1-202ENST00000411423 ZNF724A8MTY0 619 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms