RNA–Protein interactions for RNA: ENST00000409952.3

LSM5-205, Transcript of LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 4 BASIC

Gene LSM5, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM5-205	ENST00000409952	FRAT2	O75474	233 aa	Predicted RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	IGKV2-30	P06310	120 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	NGFR	P08138	427 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	FCGR3A	P08637	254 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ANXA5	P08758	320 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	RNH1	P13489	461 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	CCL2	P13500	99 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	HPGD	P15428	266 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	GATA1	P15976	413 aa	Predicted RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	CD82	P27701	267 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	DCK	P27707	260 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	LCN1	P31025	176 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	XCR1	P46094	333 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	MRPL19	P49406	292 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	TMEM50B	P56557	158 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ERVK-16	P61578	105 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	RND3	P61587	244 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	TPM4	P67936	248 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF33B	Q06732	778 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	COTL1	Q14019	142 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	GRB7	Q14451	532 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ANGPT1	Q15389	498 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	AANAT	Q16613	207 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	TRIM16L	Q309B1	348 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	LY6G6F	Q5SQ64	297 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	SEL1L2	Q5TEA6	688 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF549	Q6P9A3	640 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	COPS6	Q7L5N1	327 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	PRSS48	Q7RTY5	328 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	MRPL21	Q7Z2W9	205 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	PTAR1	Q7Z6K3	402 aa	Predicted RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	HOGA1	Q86XE5	327 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	RAB42	Q8N4Z0	105 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	IQCF1	Q8N6M8	205 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	SAMD12	Q8N8I0	201 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	CATSPER1	Q8NEC5	780 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	OR51L1	Q8NGJ5	315 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	FNDC8	Q8TC99	324 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	SPPL2A	Q8TCT8	520 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	TOMM40L	Q969M1	308 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	FAF2	Q96CS3	445 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	WBP1	Q96G27	269 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	CATSPER2	Q96P56	530 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	OPALIN	Q96PE5	141 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	TRNT1	Q96Q11	434 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	RNF2	Q99496	336 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ACBD6	Q9BR61	282 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	LLPH	Q9BRT6	129 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF670	Q9BS34	389 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	MCRIP2	Q9BUT9	160 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	RNF41	Q9H4P4	317 aa	Predicted RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	IL1RAP	Q9NPH3	570 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	MEPE	Q9NQ76	525 aa	Predicted RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	MYEF2	Q9P2K5	600 aa	Known RBP	4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	CTSF	Q9UBX1	484 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	SH3TC1	Q8TE82	1336 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	STK36	Q9NRP7	1315 aa		4.1	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF559-ZNF177	A0A0A6YYI6	481 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	TRBV9	A0A0B4J1U6	114 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	IGLON5	A6NGN9	336 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	PP2D1	A8MPX8	630 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	TRDC	B7Z8K6	153 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952		K7EQD1	137 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SIRPB1	O00241	398 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	AIM2	O14862	343 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	RAB29	O14966	203 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	OR10H3	O60404	316 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	HCN1	O60741	890 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ALDOB	P05062	364 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	PRSS1	P07477	247 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SELE	P16581	610 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF3	P17036	446 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	COX5A	P20674	150 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	BCKDHB	P21953	392 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	FGF9	P31371	208 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	HTR2B	P41595	481 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SLC1A2	P43004	574 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ARRB1	P49407	418 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	DAP3	P51398	398 aa	Known RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	LTB	Q06643	244 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SCRN3	Q0VDG4	424 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ST3GAL3	Q11203	375 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SELENBP1	Q13228	472 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ZNF177	Q13360	481 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	KIAA0141	Q14154	515 aa	Predicted RBP	4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	MTF1	Q14872	753 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	DUSP7	Q16829	419 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	EIPR1	Q53HC9	387 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ACER2	Q5QJU3	275 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	FAM120AOS	Q5T036	256 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	LINC00242	Q5T6M2	205 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	STUM	Q69YW2	141 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	AWAT2	Q6E213	333 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	REEP3	Q6NUK4	255 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	TTC23L	Q6PF05	361 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	ULK3	Q6PHR2	472 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952		Q6ZSR3	168 aa		4.09	□□□□□ -1.75
LSM5-205	ENST00000409952	SLC25A48	Q6ZT89	311 aa	Known RBP	4.09	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms