RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 SUPT7LO94864 414 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ZWINTO95229 277 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 KRT6AP02538 564 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 KRT6BP04259 564 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 SMIM10L1P0DMW3 83 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 MYL2P10916 166 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 HIST1H1TP22492 207 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 CPN2P22792 545 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 MYF6P23409 242 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 GCAP28676 217 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 HMOX2P30519 316 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 KRT6CP48668 564 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ZP1P60852 638 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ADORA2A-AS1P86434 159 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 SPOCK1Q08629 439 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 CUL3Q13618 768 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 PCLAFQ15004 111 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 ADPRMQ3LIE5 342 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 CFAP157Q5JU67 520 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 OR4C11Q6IEV9 310 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 Q6ZS92 163 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 SHFQ7M4L6 423 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 PIGWQ7Z7B1 504 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 NUDT13Q86X67 352 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 C10orf67Q8IYJ2 551 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 LRRC34Q8IZ02 419 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 CA13Q8N1Q1 262 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 GBP7Q8N8V2 638 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 POC5Q8NA72 575 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 OR5T3Q8NGG3 340 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 HAS2Q92819 552 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 SAT2Q96F10 170 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 RBM18Q96H35 190 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 SMIM10Q96HG1 83 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 TMEM68Q96MH6 324 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 F2RL3Q96RI0 385 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 MTERF1Q99551 399 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 UTP23Q9BRU9 249 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 PELOQ9BRX2 385 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 NTMT1Q9BV86 223 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 MS4A8Q9BY19 250 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 DEFB126Q9BYW3 111 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 FAM234AQ9H0X4 552 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 KRCC1Q9NPI7 259 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 PNO1Q9NRX1 252 aaKnown RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 RABL2AQ9UBK7 228 aaPredicted RBP5.77□□□□□ -1.49
USP40-202ENST00000409945 ERVK-11Q9UQG0 969 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 TMEM5Q9Y2B1 443 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 SCN3AQ9NY46 2000 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 MYO18BQ8IUG5 2567 aa5.77□□□□□ -1.49
USP40-202ENST00000409945 RP1L1Q8IWN7 2480 aaPredicted RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 A0A0G2JN53 185 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 OR5H15A6NDH6 313 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 GAGE12JA6NER3 117 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 SAGE2PA6NJ88 616 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 E2F3O00716 465 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 TM9SF1O15321 606 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 ITM2AO43736 263 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 SNX3O60493 162 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 PLOD3O60568 738 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 CTNSO60931 367 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 NDUFS7O75251 213 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 SEMA3DO95025 777 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 CRYABP02511 175 aaKnown RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 HNRNPH1P31943 449 aaKnown RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 PPP5CP53041 499 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 MLLT10P55197 1068 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 LIM2P55344 173 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 BRWD1-AS2P59051 145 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 HERVK_113P63132 956 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 OC90Q02509 493 aaPredicted RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 FRG2Q64ET8 278 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 IGFL2Q6UWQ7 119 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 RGS9BPQ6ZS82 235 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 LANCL3Q6ZV70 420 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 PATL1Q86TB9 770 aaKnown RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 RBMXL3Q8N7X1 1067 aaKnown RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 ACOT4Q8N9L9 421 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 L3MBTL4Q8NA19 623 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 TMEM178AQ8NBL3 297 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 SCCPDHQ8NBX0 429 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 OR14A16Q8NHC5 309 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 RDH11Q8TC12 318 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 TMEM163Q8TC26 289 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 MGARPQ8TDB4 240 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 TANKQ92844 425 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 IMMP1LQ96LU5 166 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 ERVK-6Q9BXR3 956 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 KRTAP4-11Q9BYQ6 195 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 KLHL4Q9C0H6 718 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 ADAP2Q9NPF8 381 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 ACSS1Q9NUB1 689 aaPredicted RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 PSME2Q9UL46 239 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 ZNF490Q9ULM2 529 aaPredicted RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 MED13Q9UHV7 2174 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 HELZ2Q9BYK8 2649 aaKnown RBP5.76□□□□□ -1.49
USP40-202ENST00000409945 IGHV3-20A0A0C4DH32 117 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 A8MT66 165 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 TCP11X1B4DZS4 312 aa5.76□□□□□ -1.49
USP40-202ENST00000409945 MS4A18H0YCH9 400 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms