RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 TGFBR1P36897 503 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 SOX3P41225 446 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 BMXP51813 675 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 DESI1Q6ICB0 168 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 SPSB2Q99619 263 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 LPAR4Q99677 370 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 TNFRSF10DQ9UBN6 386 aa23.03■■□□□ 1.28
SHOX2-201ENST00000389589 C19orf25Q9UFG5 118 aaPredicted RBP23.03■■□□□ 1.28
SHOX2-201ENST00000389589 IGKV1D-42A0A075B6H8 117 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 HCRTR2O43614 444 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 LDOC1O95751 146 aaPredicted RBP23.02■■□□□ 1.28
SHOX2-201ENST00000389589 PSMA1P25786 263 aaKnown RBP23.02■■□□□ 1.28
SHOX2-201ENST00000389589 MPLP40238 635 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 EFR3AQ14156 821 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 PAPD4Q6PIY7 484 aaKnown RBP23.02■■□□□ 1.28
SHOX2-201ENST00000389589 MARCH3Q86UD3 253 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 ZBTB46Q86UZ6 589 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 BMPERQ8N8U9 685 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 OR4F15Q8NGB8 312 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 DTNBP1Q96EV8 351 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 SH3GL3Q99963 347 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 CENPOQ9BU64 300 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 CRB3Q9BUF7 120 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 SLIRPQ9GZT3 109 aaKnown RBP23.02■■□□□ 1.28
SHOX2-201ENST00000389589 PCDHGB2Q9Y5G2 931 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 NCOR1O75376 2440 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 SLC22A31A6NKX4 558 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 CPEP16870 476 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 ITGADQ13349 1161 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 TMEM205Q6UW68 189 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 SHFQ7M4L6 423 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 CPEB2Q7Z5Q1 589 aaKnown RBP23.02■■□□□ 1.28
SHOX2-201ENST00000389589 AMER2Q8N7J2 671 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 SLC37A3Q8NCC5 494 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 LIPHQ8WWY8 451 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 NACC2Q96BF6 587 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 CTRCQ99895 268 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 ADAM19Q9H013 955 aa23.02■■□□□ 1.28
SHOX2-201ENST00000389589 VCANP13611 3396 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 LOC105378220A0A1B0GUY1 285 aaPredicted RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 FADS1O60427 444 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 ZNF362Q5T0B9 420 aaPredicted RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 MRPL14Q6P1L8 145 aaKnown RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 DPY19L2P2Q6ZN68 376 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 NUP54Q7Z3B4 507 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 PHC2Q8IXK0 858 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 OR8K3Q8NH51 312 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 SH3YL1Q96HL8 342 aaPredicted RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 LOXL4Q96JB6 756 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 DACH2Q96NX9 599 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 RTN4RQ9BZR6 473 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 WDR54Q9H977 334 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 CHRNA9Q9UGM1 479 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 KLHL21Q9UJP4 597 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 NXT1Q9UKK6 140 aaKnown RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 STUB1Q9UNE7 303 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 NPFFR2Q9Y5X5 522 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 PMF1-BGLAPU3KQ54 211 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 KHNYNO15037 678 aaKnown RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 PGCP20142 388 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 EVI2BP34910 448 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 PRPS1P60891 318 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 OR5M3Q8NGP4 307 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 S100ZQ8WXG8 99 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 PTP4A1Q93096 173 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 ERMAPQ96PL5 475 aaPredicted RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 WDR77Q9BQA1 342 aaPredicted RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 SMOC1Q9H4F8 434 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 MED20Q9H944 212 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 RXFP3Q9NSD7 469 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 CCDC59Q9P031 241 aaKnown RBP23.01■■□□□ 1.27
SHOX2-201ENST00000389589 A3GALT2U3KPV4 340 aa23.01■■□□□ 1.27
SHOX2-201ENST00000389589 TSPAN19P0C672 248 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 ACP1P24666 158 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 MST1P26927 711 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 MC2RQ01718 297 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 OR2G6Q5TZ20 316 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 DBX2Q6ZNG2 339 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 KLHL36Q8N4N3 616 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 LRRC17Q8N6Y2 441 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 OR5L2Q8NGL0 311 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 OR5W2Q8NH69 310 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 SECISBP2Q96T21 854 aaKnown RBP23■■□□□ 1.27
SHOX2-201ENST00000389589 FBXO8Q9NRD0 319 aa23■■□□□ 1.27
SHOX2-201ENST00000389589 J3QRE1 110 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 GPX5O75715 221 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 TACR3P29371 465 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 RPS4XP62701 263 aaKnown RBP22.99■■□□□ 1.27
SHOX2-201ENST00000389589 CBFBQ13951 182 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 LCN10Q6JVE6 187 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 LHFPL3Q86UP9 236 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 MISPQ8IVT2 679 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 OR52N1Q8NH53 320 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 ARHGAP9Q9BRR9 750 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 ARRDC1-AS1Q9H2J1 176 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 MMP27Q9H306 513 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 HMG20AQ9NP66 347 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 ERVK13-1Q9NX77 482 aa22.99■■□□□ 1.27
SHOX2-201ENST00000389589 GPN3Q9UHW5 284 aaPredicted RBP22.99■■□□□ 1.27
SHOX2-201ENST00000389589 SPIN1Q9Y657 262 aaPredicted RBP22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms