RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 CD46P15529 392 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 GSTM3P21266 225 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 IFNA8P32881 189 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 IFNGR2P38484 337 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 LIPAP38571 399 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CD96P40200 585 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 RGS8P57771 180 aaPredicted RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 LSM3P62310 102 aaKnown RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 LSM11P83369 360 aaKnown RBP eCLIP9.32□□□□□ -0.92
VPS53-202ENST00000389040 ST3GAL3Q11203 375 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 IRF3Q14653 427 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 EXOSC7Q15024 291 aaKnown RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 LARS2Q15031 903 aaKnown RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 ZNF829Q3KNS6 432 aaPredicted RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 CT45A2Q5DJT8 189 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ENTPD8Q5MY95 495 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 EXOSC6Q5RKV6 272 aaKnown RBP9.32□□□□□ -0.92
VPS53-202ENST00000389040 TMEM201Q5SNT2 666 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 AP1ARQ63HQ0 302 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 TMEM81Q6P7N7 255 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 PCSK4Q6UW60 755 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 LINC00696Q6ZRV3 163 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 NUP54Q7Z3B4 507 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 PEX5LQ8IYB4 626 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CLIP4Q8N3C7 705 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 TEX19Q8NA77 164 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 OR8J1Q8NGP2 316 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 NDNFQ8TB73 568 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 OIT3Q8WWZ8 545 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 DIO2Q92813 273 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 POM121Q96HA1 1249 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 GAL3ST4Q96RP7 486 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CDCA4Q9BXL8 241 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ZNF350Q9GZX5 532 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 ANKRD19PQ9H560 264 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 FOLH1BQ9HBA9 442 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 HPF1Q9NWY4 346 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 CNIH4Q9P003 139 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 LRFN1Q9P244 771 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 NPFFR2Q9Y5X5 522 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 PCSK5Q92824 1860 aa9.32□□□□□ -0.92
VPS53-202ENST00000389040 A0A087WUU8 490 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 OR6C70A6NIJ9 312 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 M0R082 166 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 M0R3G1 203 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 WWP2O00308 870 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 AP3D1O14617 1153 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PRKNO60260 465 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 NKX2-2O95096 273 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 AK1P00568 194 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PTHP01270 115 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 SLC15A1P46059 708 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PNLIPRP2P54317 469 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 MLLT10P55197 1068 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 VBP1P61758 197 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 NCS1P62166 190 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PSG6Q00889 435 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 DUSP8Q13202 625 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 NTRK2Q16620 822 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF791Q3KP31 576 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF836Q6ZNA1 936 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 RTL4Q6ZR62 310 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZBTB46Q86UZ6 589 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 SLC34A3Q8N130 599 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 IQCF1Q8N6M8 205 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 TMEM178AQ8NBL3 297 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 DOK4Q8TEW6 326 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 THAP3Q8WTV1 239 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 BORCS5Q969J3 196 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 SPACA9Q96E40 222 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 SDF2Q99470 211 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 GPA33Q99795 319 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 SLC25A19Q9HC21 320 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 DNAJC27Q9NZQ0 273 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF232Q9UNY5 417 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ITPR1Q14643 2758 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 AGAP5A6NIR3 686 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PPM1BO75688 479 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 NADKO95544 446 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 THBS1P07996 1170 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ABCD3P28288 659 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 NR0B1P51843 470 aaKnown RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 EEF1A1P68104 462 aaKnown RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 HOXC5Q00444 222 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 OC90Q02509 493 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 SNTA1Q13424 505 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 EFR3AQ14156 821 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 GINS1Q14691 196 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF169Q14929 603 aaPredicted RBP9.31□□□□□ -0.92
VPS53-202ENST00000389040 OR1C1Q15619 314 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 DECR1Q16698 335 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 EIPR1Q53HC9 387 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 DCST2Q5T1A1 773 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 CCNJQ5T5M9 372 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF730Q6ZMV8 503 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 PLEKHM3Q6ZWE6 761 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF367Q7RTV3 350 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 CYP4Z2PQ8N1L4 340 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 ZNF619Q8N2I2 560 aa9.31□□□□□ -0.92
VPS53-202ENST00000389040 RBMXL3Q8N7X1 1067 aaKnown RBP9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms