RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 AADACL3Q5VUY0 350 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 FAM180BQ6P0A1 224 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 CDHR3Q6ZTQ4 885 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 SLC30A7Q8NEW0 376 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 C2orf78A6NCI8 922 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 RNASET2O00584 256 aaKnown RBP11.71□□□□□ -0.53
VPS13A-204ENST00000376634 DPM1O60762 260 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 GIFP27352 417 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 HLA-DMAP28067 261 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 IL2RGP31785 369 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 PRICKLE2Q7Z3G6 844 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 BAGE3Q86Y29 109 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 BAGE2Q86Y30 109 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 OR4Q3Q8NH05 313 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 OR4A16Q8NH70 328 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 L3HYPDHQ96EM0 354 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 TPPP3Q9BW30 176 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 C5AR2Q9P296 337 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 IER3IP1Q9Y5U9 82 aa11.71□□□□□ -0.53
VPS13A-204ENST00000376634 IGKV6D-41A0A0C4DH26 115 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 FOXE1O00358 373 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 LAMP1P11279 417 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 GDF1P27539 372 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 VASNQ6EMK4 673 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 SLC15A4Q8N697 577 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 ADAM10O14672 748 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 SNCGO76070 127 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 DOCK1Q14185 1865 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 FAM122AQ96E09 287 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 ZFYVE21Q9BQ24 234 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 C1orf123Q9NWV4 160 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 ENPP4Q9Y6X5 453 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 WASH4PA8MWX3 477 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 MGAT3Q09327 533 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 NFATC3Q12968 1075 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 B3GLCTQ6Y288 498 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 GDPGP1Q6ZNW5 385 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 BRIX1Q8TDN6 353 aaKnown RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 SMAP2Q8WU79 429 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 DMRT3Q9NQL9 472 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 FAM212BQ9NTI7 297 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 PLXNA1Q9UIW2 1896 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 SHANK1Q9Y566 2161 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 HSD17B1P14061 328 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 NFYAP23511 347 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 METAP1DQ6UB28 335 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF705AQ6ZN79 300 aaPredicted RBP11.71□□□□□ -0.54
VPS13A-204ENST00000376634 ULBP3Q9BZM4 244 aa11.71□□□□□ -0.54
VPS13A-204ENST00000376634 SEC14L6B5MCN3 397 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SURF4O15260 269 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 HEXAP06865 529 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GSK3AP49840 483 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 NDUFA6P56556 154 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GALNT1Q10472 559 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 DUSP7Q16829 419 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TP53I3Q53FA7 332 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 RNLSQ5VYX0 342 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF765Q7L2R6 523 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PDZD3Q86UT5 571 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 C4orf36Q96KX1 117 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 LMF2Q9BU23 707 aaKnown RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CPEB1Q9BZB8 566 aaKnown RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 KCNIP2Q9NS61 270 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 LOC285095A0A1B0GVY8 99 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF891A8MT65 544 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 B4GAT1O43505 415 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TMEM11P17152 192 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 IL3RAP26951 378 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ATP1B3P54709 279 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CYB561A3Q8NBI2 242 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ACOT11Q8WXI4 607 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SIGLEC10Q96LC7 697 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 COL1A1P02452 1464 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ANK1P16157 1881 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 MRPS14O60783 128 aaKnown RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A6P0DMU7 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A5P0DMU8 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A7P0DMV0 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A8P0DMV1 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A9P0DMV2 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 MRPS10P82664 201 aaKnown RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 SPOCK1Q08629 439 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 DEFB110Q30KQ9 67 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A2Q5DJT8 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A1Q5HYN5 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PIP5KL1Q5T9C9 394 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 LCN10Q6JVE6 187 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GRAMD2AQ8IUY3 354 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 UMODL1-AS1Q8N2C9 162 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ACVR1CQ8NER5 493 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 B3GNT7Q8NFL0 401 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 CT45A3Q8NHU0 189 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 HSPB6O14558 160 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 GPR39O43194 453 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TYROBPO43914 113 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 TIMM8AO60220 97 aaPredicted RBP11.7□□□□□ -0.54
VPS13A-204ENST00000376634 VIPR2P41587 438 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 PBX4Q9BYU1 374 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 INIPQ9NRY2 104 aa11.7□□□□□ -0.54
VPS13A-204ENST00000376634 ZNF840PA6NDX5 716 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms