RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 ZCCHC2Q9C0B9 1178 aaKnown RBP6.28□□□□□ -1.4
VPS39-202ENST00000348544 MFFQ9GZY8 342 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 SLC25A18Q9H1K4 315 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FKRPQ9H9S5 495 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 INPP5EQ9NRR6 644 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 POT1Q9NUX5 634 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TAS2R3Q9NYW6 316 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 AHSPQ9NZD4 102 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 FOXJ3Q9UPW0 622 aa6.28□□□□□ -1.4
VPS39-202ENST00000348544 TCF20Q9UGU0 1960 aaKnown RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 TRAV14DV4A0A0A6YYC5 116 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 ABHD14A-ACY1A0A1B0GW23 586 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 H7C4K7 107 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 STX11O75558 287 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 RASGRP1O95267 797 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 LATS1O95835 1130 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 FGBP02675 491 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 GYPBP06028 91 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 RPA2P15927 270 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 ADCYAP1P18509 176 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 TEAD1P28347 426 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 MAGEB1P43366 347 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 ART1P52961 327 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CLDN2P57739 230 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 RGS8P57771 180 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 AP3S2P59780 193 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 PRR5P85299 388 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 LGALS3BPQ08380 585 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CBFBQ13951 182 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CST9Q5W186 159 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 TXNDC8Q6A555 127 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 FCRLAQ7L513 359 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 RAB11FIP2Q7L804 512 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 OVCH1Q7RTY7 1134 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 GJD3Q8N144 294 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 MUC20Q8N307 709 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 ARL14Q8N4G2 192 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CYB561A3Q8NBI2 242 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 OR2AK2Q8NG84 335 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 PFN4Q8NHR9 129 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 FCAMRQ8WWV6 532 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 WNT2BQ93097 391 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 UBE2E3Q969T4 207 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 ZNF689Q96CS4 500 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 NARS2Q96I59 477 aaKnown RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 LMLNQ96KR4 655 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 C1QTNF2Q9BXJ5 285 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 AICDAQ9GZX7 198 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 RHBGQ9H310 441 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 C20orf141Q9NUB4 165 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 SLC7A7Q9UM01 511 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 HS3ST2Q9Y278 367 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 UNC119BA6NIH7 251 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 SLC22A31A6NKX4 558 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 OGG1O15527 345 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 FCMRO60667 390 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 LILRB5O75023 590 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 GP1BAP07359 652 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 PRG2P13727 222 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 KCNJ3P48549 501 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 TAS2R38P59533 333 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CDK5R1Q15078 307 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 SLC8B1Q6J4K2 584 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 NUDT18Q6ZVK8 323 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 DEFB132Q7Z7B7 95 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 LNX2Q8N448 690 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CAMKVQ8NCB2 501 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 OR4D10Q8NGI6 311 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 FIBINQ8TAL6 211 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 NR4A3Q92570 626 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 TIFAQ96CG3 184 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 SMIM19Q96E16 107 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 PELI1Q96FA3 418 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 ZNF764Q96H86 408 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 CMTM3Q96MX0 182 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 MS4A4EQ96PG1 132 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 PDCD1LG2Q9BQ51 273 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CMSS1Q9BQ75 279 aaKnown RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 PRSS27Q9BQR3 290 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 CRISPLD2Q9H0B8 497 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 NRIP3Q9NQ35 241 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 EQTNQ9NQ60 294 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 TAS2R10Q9NYW0 307 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 SPG21Q9NZD8 308 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 AKAP7Q9P0M2 348 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 ZNF223Q9UK11 482 aaPredicted RBP6.27□□□□□ -1.41
VPS39-202ENST00000348544 SLC13A4Q9UKG4 626 aa6.27□□□□□ -1.41
VPS39-202ENST00000348544 IFITM5A6NNB3 132 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 NDUFS4O43181 175 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ARL6IP5O75915 188 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 FGF18O76093 207 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 OR5F1O95221 314 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 POP4O95707 220 aaKnown RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 SERPINA3P01011 423 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ASGR1P07306 291 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 ACAA1P09110 424 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 TMIGD3P0DMS9 266 aaPredicted RBP6.26□□□□□ -1.41
VPS39-202ENST00000348544 CNR1P21554 472 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 CDK2P24941 298 aa6.26□□□□□ -1.41
VPS39-202ENST00000348544 MAPK3P27361 379 aaPredicted RBP6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms