RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 TBC1D3HP0C7X1 549 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM115Q12893 351 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TBC1D3GQ6DHY5 549 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 RTL6Q6ICC9 239 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TBC1D3CQ6IPX1 549 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TMED4Q7Z7H5 227 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TBC1D3Q8IZP1 549 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 C12orf76Q8N812 135 aaPredicted RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 TSEN15Q8WW01 171 aaKnown RBP3.32□□□□□ -1.88
SYNE1-201ENST00000341594 ABRACLQ9P1F3 81 aa3.32□□□□□ -1.88
SYNE1-201ENST00000341594 GTF2F2P13984 249 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NDUFB7P17568 137 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DPY30Q9C005 99 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 KCNH6Q9H252 994 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NANOGQ9H9S0 305 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 VAPAQ9P0L0 249 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PIN4Q9Y237 131 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FAM230AA0A1W2PPH8 454 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF207O43670 478 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 KIAA0513O60268 411 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DNASE1P24855 282 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FPR3P25089 353 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SHC1P29353 583 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 BLOC1S1P78537 153 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC25A52Q3SY17 297 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LGALSLQ3ZCW2 172 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C14orf28Q4W4Y0 310 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HIST2H3PS2Q5TEC6 136 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NXPE4Q6UWF7 544 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC16A10Q8TF71 515 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 COQ10AQ96MF6 247 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 RRAGCQ9HB90 399 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 METTL1Q9UBP6 276 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 A0A087WZY1 265 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 STK17BO94768 372 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF345Q14585 488 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NAA40Q86UY6 237 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SCUBE2Q9NQ36 999 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HRH3Q9Y5N1 445 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 K7EPK0 472 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SUOXP51687 545 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF691Q5VV52 312 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF600Q6ZNG1 722 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FAM71E2Q8N5Q1 922 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ULBP3Q9BZM4 244 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 F8W036 122 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GOSR1O95249 250 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PGCP20142 388 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC6A1P30531 599 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TPBGQ13641 420 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PAFAH1B3Q15102 231 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SLC9A3R2Q15599 337 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LCN10Q6JVE6 187 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TECTBQ96PL2 329 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SYT4Q9H2B2 425 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PLEKHB1Q9UF11 243 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CCSO14618 274 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PRRG1O14668 218 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GUSBP08236 651 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CXCL8P10145 99 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CYP2A7P20853 494 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ZNF10P21506 573 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NR6A1Q15406 480 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 Q5BKY6 102 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 REP15Q6BDI9 236 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 USP30Q70CQ3 517 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LINGO2Q7L985 606 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C1QL4Q86Z23 238 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 DNERQ8NFT8 737 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR6S1Q8NH40 331 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ISG20Q96AZ6 181 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 HSPA12BQ96MM6 686 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR6C6A6NF89 314 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARPC2O15144 300 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARL6IP5O75915 188 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CES5AQ6NT32 575 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARL9Q6T311 187 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FBXO39Q8N4B4 442 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR5B12Q96R08 314 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 WWTR1Q9GZV5 400 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PCDHA9Q9Y5H5 950 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MT-ND4LP03901 98 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OTX1P32242 354 aaPredicted RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SPIBQ01892 262 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CYP24A1Q07973 514 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FAM181AQ8N9Y4 354 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 OR4K2Q8NGD2 314 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 C3orf30Q96M34 536 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 SIRT5Q9NXA8 310 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 MMP24Q9Y5R2 645 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 FMO6PO60774 539 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 CSO75390 466 aaKnown RBP3.31□□□□□ -1.88
SYNE1-201ENST00000341594 PSMD10O75832 226 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 THBS3P49746 956 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 ARHGAP19Q14CB8 494 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 GPRIN3Q6ZVF9 776 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 NRROSQ86YC3 692 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 THEM6Q8WUY1 208 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 LCN9Q8WX39 176 aa3.31□□□□□ -1.88
SYNE1-201ENST00000341594 TMEM37Q8WXS4 190 aa3.31□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms