RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OR56B2PQ8NGI1 322 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 HUS1BQ8NHY5 278 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TSLPQ969D9 159 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SEC16BQ96JE7 1060 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 URM1Q9BTM9 101 aaKnown RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 TEX101Q9BY14 249 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 INIPQ9NRY2 104 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 MYH2Q9UKX2 1941 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 PRSS51A0A1B0GVH4 220 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 OR14I1A6ND48 311 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SLC33A1O00400 549 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 RPP14O95059 124 aaKnown RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 UTS2O95399 124 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 C6orf47O95873 294 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SOX3P41225 446 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 GUCA2BQ16661 112 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ARHGAP11BQ3KRB8 267 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ANKRD16Q6P6B7 361 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 DHFR2Q86XF0 187 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 BORCS5Q969J3 196 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 ELOVL1Q9BW60 279 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 GON7Q9BXV9 100 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 AMMECR1Q9Y4X0 333 aaPredicted RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 RNF114Q9Y508 228 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SCN9AQ15858 1988 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 GABBR2O75899 941 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 SASH3O75995 380 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 RGS6P49758 472 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 LTC4SQ16873 150 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 LRRC18Q8N456 261 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 MTERF3Q96E29 417 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 METTL2AQ96IZ6 378 aaKnown RBP7.74□□□□□ -1.17
HMGB1-203ENST00000341423 COQ7Q99807 217 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 EVA1AQ9H8M9 152 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 GFOD1Q9NXC2 390 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 A3GALT2U3KPV4 340 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 UNC13CQ8NB66 2214 aa7.74□□□□□ -1.17
HMGB1-203ENST00000341423 IGHV5-51A0A0C4DH38 117 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SCAMP2O15127 329 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SPINT2O43291 252 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF821O75541 412 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ARHGEF15O94989 841 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PRR35P0CG20 571 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FCARP24071 287 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 POLR2JP52435 117 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PFN3P60673 137 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 RNF4P78317 190 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 MICBQ29980 383 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CLEC12BQ2HXU8 276 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PDZK1Q5T2W1 519 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM205BPQ63HN1 556 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 OR1J1Q8NGS3 322 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CREB3L1Q96BA8 519 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ARPC5LQ9BPX5 153 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SIKE1Q9BRV8 207 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 RBM4Q9BWF3 364 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 WDR12Q9GZL7 423 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SLC5A7Q9GZV3 580 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 AKTIPQ9H8T0 292 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SRA1Q9HD15 236 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TAAR3PQ9P1P4 343 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 MKLN1Q9UL63 735 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ACTL7AQ9Y615 435 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 RGPD8O14715 1765 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 UBL3O95164 117 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ADRA1AP35348 466 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 LIPAP38571 399 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 APOBEC1P41238 236 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PAFAH1B2P68402 229 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 NADK2Q4G0N4 442 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 Q5PR19 223 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ZNF684Q5T5D7 378 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SYT14Q8NB59 555 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ELP5Q8TE02 316 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TMIGD2Q96BF3 282 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PCDHB18PQ96TA0 734 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 AGAP2Q99490 1192 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TOR4AQ9NXH8 423 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ELOVL5Q9NYP7 299 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 LOC101059948A0A1B0GTJ6 334 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CLDN24A6NM45 220 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM72CH0Y354 149 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 EIF4E2O60573 245 aaKnown RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CYC1P08574 325 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FGF3P11487 239 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 IVDP26440 423 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 MICAQ29983 383 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM72AQ5TYM5 149 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 NAIF1Q69YI7 327 aaPredicted RBP7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM72DQ6L9T8 149 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 RPL13AP3Q6NVV1 102 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 GOLGA7Q7Z5G4 137 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 NLRP14Q86W24 1093 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 FAM72BQ86X60 149 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 PRR18Q8N4B5 295 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 CLDN22Q8N7P3 220 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 ACTRT1Q8TDG2 376 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 SIGLEC12Q96PQ1 595 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 TRIM8Q9BZR9 551 aa7.73□□□□□ -1.17
HMGB1-203ENST00000341423 HIF1ANQ9NWT6 349 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms