RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 MTPNP58546 118 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 SORDQ00796 357 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 NFYCQ13952 458 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 LARS2Q15031 903 aaKnown RBP13.74□□□□□ -0.21
VAPA-201ENST00000340541 SYT14P1Q58G82 188 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 REEP3Q6NUK4 255 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 PPP4R4Q6NUP7 873 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 ZNF474Q6S9Z5 364 aaPredicted RBP13.74□□□□□ -0.21
VAPA-201ENST00000340541 COMTD1Q86VU5 262 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 PTOV1Q86YD1 416 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 ZNF440Q8IYI8 595 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 ABHD3Q8WU67 409 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 SLC25A43Q8WUT9 341 aaPredicted RBP13.74□□□□□ -0.21
VAPA-201ENST00000340541 NRGNQ92686 78 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 MBD6Q96DN6 1003 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 GPATCH1Q9BRR8 931 aaKnown RBP13.74□□□□□ -0.21
VAPA-201ENST00000340541 PRRG4Q9BZD6 226 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 OPN3Q9H1Y3 402 aaPredicted RBP13.74□□□□□ -0.21
VAPA-201ENST00000340541 SERINC1Q9NRX5 453 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 CHRNA9Q9UGM1 479 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 OSGIN1Q9UJX0 560 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 IFT52Q9Y366 437 aa13.74□□□□□ -0.21
VAPA-201ENST00000340541 C5orf58C9J3I9 102 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 SMAD9O15198 467 aaKnown RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 FOSL1P15407 271 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 ENPP1P22413 925 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 TACR3P29371 465 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 SLC7A1P30825 629 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 SLC1A3P43003 542 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 RAC3P60763 192 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 SCARB2Q14108 478 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 CAPRIN1Q14444 709 aaKnown RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 ZSWIM7Q19AV6 140 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 TRMT5Q32P41 509 aaKnown RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 COQ5Q5HYK3 327 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 ZNF311Q5JNZ3 666 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 NET1Q7Z628 596 aaPredicted RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 SERPINA11Q86U17 422 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 ALPK1Q96QP1 1244 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 OR5B2Q96R09 309 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 OR11A1Q9GZK7 315 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 ADAM19Q9H013 955 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 KAT8Q9H7Z6 458 aaKnown RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 TIGARQ9NQ88 270 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 GLRX2Q9NS18 164 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 MRGBPQ9NV56 204 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 ING1Q9UK53 422 aaPredicted RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 ZNF232Q9UNY5 417 aa13.73□□□□□ -0.21
VAPA-201ENST00000340541 NIPBLQ6KC79 2804 aaeCLIP13.73□□□□□ -0.21
VAPA-201ENST00000340541 PRRC2AP48634 2157 aaKnown RBP13.73□□□□□ -0.21
VAPA-201ENST00000340541 TMED7-TICAM2A0A0A6YYA0 188 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 FRS3O43559 492 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 SMNDC1O75940 238 aaKnown RBP eCLIP13.72□□□□□ -0.211e-7■■■□□ 18.1
VAPA-201ENST00000340541 EPXP11678 715 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 AGTR1P30556 359 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 ADSLP30566 484 aaPredicted RBP13.72□□□□□ -0.21
VAPA-201ENST00000340541 PRKAR1BP31321 381 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 HTR3AP46098 478 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 PCYT1AP49585 367 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 DIO1P49895 249 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 GZMMP51124 257 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 POLR2HP52434 150 aaKnown RBP13.72□□□□□ -0.21
VAPA-201ENST00000340541 SEC24CP53992 1094 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 PCBP3P57721 371 aaKnown RBP13.72□□□□□ -0.21
VAPA-201ENST00000340541 TMPPEQ6ZT21 453 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 FCRLAQ7L513 359 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 CDC20BQ86Y33 519 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 ZNF610Q8N9Z0 462 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 OR6K3Q8NGY3 331 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 SLC35B4Q969S0 331 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 POM121Q96HA1 1249 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 ARL5BQ96KC2 179 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 SLC39A3Q9BRY0 314 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 PLSCR4Q9NRQ2 329 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 ARMCX1Q9P291 453 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 PRDM4Q9UKN5 801 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 TMED7Q9Y3B3 224 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 FREM1Q5H8C1 2179 aa13.72□□□□□ -0.21
VAPA-201ENST00000340541 HRNRQ86YZ3 2850 aaPredicted RBP13.72□□□□□ -0.21
VAPA-201ENST00000340541 IGHV3-15A0A0B4J1V0 119 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 TMEM72A0PK05 275 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 TUBAL3A6NHL2 446 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 SLC22A2O15244 555 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 ZNF208O43345 1280 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 TPST1O60507 370 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 GCM2O75603 506 aaPredicted RBP13.71□□□□□ -0.21
VAPA-201ENST00000340541 PLGP00747 810 aaPredicted RBP13.71□□□□□ -0.21
VAPA-201ENST00000340541 UQCRBP14927 111 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 CCNA2P20248 432 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 SLC6A2P23975 617 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 CCKARP32238 428 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 CPOXP36551 454 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 CPA2P48052 419 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 CLK1P49759 484 aaKnown RBP13.71□□□□□ -0.21
VAPA-201ENST00000340541 FAM27E3Q08E93 113 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 RNPS1Q15287 305 aaKnown RBP13.71□□□□□ -0.21
VAPA-201ENST00000340541 GLIPR1L2Q4G1C9 344 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 REP15Q6BDI9 236 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 NANOGP8Q6NSW7 305 aa13.71□□□□□ -0.21
VAPA-201ENST00000340541 DHRS4L2Q6PKH6 230 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms