RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 SMPDL3BQ92485 455 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 SLCO4A1Q96BD0 722 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 SARAFQ96BY9 339 aa19.99■□□□□ 0.79
SDC3-202ENST00000339394 A0A087WUJ7 227 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 TMEM72A0PK05 275 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 ELOA3DA6NLF2 546 aaPredicted RBP19.98■□□□□ 0.79
SDC3-202ENST00000339394 IFNA8P32881 189 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 MAP2K6P52564 334 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 CLDN20P56880 219 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 FOXD4Q12950 439 aaPredicted RBP19.98■□□□□ 0.79
SDC3-202ENST00000339394 ELOA3BQ3SY89 546 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 PRICKLE2Q7Z3G6 844 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 OFCC1Q8IZS5 231 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 ELOA3Q8NG57 546 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 RELTQ969Z4 430 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 FNDC11Q9BVV2 318 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 NMNAT1Q9HAN9 279 aaPredicted RBP19.98■□□□□ 0.79
SDC3-202ENST00000339394 STOML1Q9UBI4 398 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 COL6A6A6NMZ7 2263 aa19.98■□□□□ 0.79
SDC3-202ENST00000339394 H0YC42 278 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 THRBP10828 461 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 HOXB6P17509 224 aaKnown RBP19.97■□□□□ 0.79
SDC3-202ENST00000339394 SHC1P29353 583 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 SFTPDP35247 375 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 PTGS2P35354 604 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 TPD52P55327 224 aaPredicted RBP19.97■□□□□ 0.79
SDC3-202ENST00000339394 CLDN18P56856 261 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 TLE1Q04724 770 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 ST3GAL3Q11203 375 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 BCL2A1Q16548 175 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 TMEM176BQ3YBM2 270 aaPredicted RBP19.97■□□□□ 0.79
SDC3-202ENST00000339394 LINC00114Q6XXX2 140 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 WDR88Q6ZMY6 472 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 UBQLNLQ8IYU4 475 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 PAPD5Q8NDF8 572 aaKnown RBP19.97■□□□□ 0.79
SDC3-202ENST00000339394 ST6GALNAC3Q8NDV1 305 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 ZNF347Q96SE7 839 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 PIP5K1AQ99755 562 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 PRSS27Q9BQR3 290 aa19.97■□□□□ 0.79
SDC3-202ENST00000339394 SPIN1Q9Y657 262 aaPredicted RBP19.97■□□□□ 0.79
SDC3-202ENST00000339394 ZNF208O43345 1280 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 ZNF708P17019 499 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 FKBP2P26885 142 aaKnown RBP19.96■□□□□ 0.79
SDC3-202ENST00000339394 SLC7A1P30825 629 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 SUCLG1P53597 346 aaKnown RBP19.96■□□□□ 0.79
SDC3-202ENST00000339394 CLDN15P56746 228 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 SYT14P1Q58G82 188 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 ZNF605Q86T29 641 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 GGNQ86UU5 652 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 NKAIN4Q8IVV8 208 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 WDYHV1Q96HA8 205 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 MPP4Q96JB8 637 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 OR11A1Q9GZK7 315 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 MAN2C1Q9NTJ4 1040 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 FAM208BQ5VWN6 2430 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 ZNF407Q9C0G0 2248 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 RELNP78509 3460 aa19.96■□□□□ 0.79
SDC3-202ENST00000339394 ZC3H12DA2A288 527 aaKnown RBP19.95■□□□□ 0.78
SDC3-202ENST00000339394 SEC14L5O43304 696 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 FKBP6O75344 327 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 ENTPD5O75356 428 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 CPN1P15169 458 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 SRYQ05066 204 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 C3AR1Q16581 482 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 PIK3C3Q8NEB9 887 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 SLC25A43Q8WUT9 341 aaPredicted RBP19.95■□□□□ 0.78
SDC3-202ENST00000339394 MED12Q93074 2177 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 DUS3LQ96G46 650 aaKnown RBP19.95■□□□□ 0.78
SDC3-202ENST00000339394 PRDM14Q9GZV8 571 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 TESMINQ9Y4I5 508 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 IGKV1D-42A0A075B6H8 117 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 GJE1A6NN92 205 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 A8MVM7 634 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 BCKDKO14874 412 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 PTNP21246 168 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 EGR4Q05215 589 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 GXYLT1Q4G148 440 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 P3H2Q8IVL5 708 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 OR5M9Q8NGP3 310 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 DDIT4LQ96D03 193 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 ARL5BQ96KC2 179 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 KLHL15Q96M94 604 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 ZNF426Q9BUY5 554 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 AP4S1Q9Y587 144 aa19.95■□□□□ 0.78
SDC3-202ENST00000339394 A0A0J9YW62 118 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 A0A1W2PRQ8 180 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 EIF1AYO14602 144 aaKnown RBP19.94■□□□□ 0.78
SDC3-202ENST00000339394 ADAMDEC1O15204 470 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 NPIPB7O75200 414 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 H1F0P07305 194 aaKnown RBP19.94■□□□□ 0.78
SDC3-202ENST00000339394 FREM3P0C091 2139 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 TFPIP10646 304 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 ABOP16442 354 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 CLK1P49759 484 aaKnown RBP19.94■□□□□ 0.78
SDC3-202ENST00000339394 C19orf57Q0VDD7 668 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 DGCR6Q14129 220 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 TRAM2Q15035 370 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 CTU2Q2VPK5 515 aaKnown RBP19.94■□□□□ 0.78
SDC3-202ENST00000339394 WLSQ5T9L3 541 aa19.94■□□□□ 0.78
SDC3-202ENST00000339394 C1QL3Q5VWW1 255 aa19.94■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms