RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 LINC01599Q8WXQ3 324 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 HERPUD2Q9BSE4 406 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 CRB3Q9BUF7 120 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 TNFSF8P32971 234 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ETV4P43268 484 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 RFX2P48378 723 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 LCN6P62502 163 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 DLX2Q07687 328 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ADGRG5Q8IZF4 528 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 C14orf79Q96F83 325 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 FBXO8Q9NRD0 319 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 GPR52Q9Y2T5 361 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 MN1Q10571 1320 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ARNTLO00327 626 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 CD63P08962 238 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 FBLP22087 321 aaKnown RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 MTNR1BP49286 362 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 UBE2NP61088 152 aaKnown RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 H3F3CQ6NXT2 135 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 OR5M3Q8NGP4 307 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF395Q9H8N7 513 aaPredicted RBP13.42□□□□□ -0.26
COL7A1-201ENST00000328333 ITGB4P16144 1822 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 MYOFQ9NZM1 2061 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SULT1C4O75897 302 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 S1PR4O95977 384 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SSTR2P30874 369 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 HINT2Q9BX68 163 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SLC39A9Q9NUM3 307 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 HEATR5AQ86XA9 2040 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 METTL15A6NJ78 407 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 DGKEP52429 567 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 STEAP3Q658P3 488 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 SH3RF2Q8TEC5 729 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 BABAM2Q9NXR7 383 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 IL37Q9NZH6 218 aa13.42□□□□□ -0.26
COL7A1-201ENST00000328333 WNT7AO00755 349 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 TBPP20226 339 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SH3BP2P78314 561 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SLC14A1Q13336 389 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CSNK1A1LQ8N752 337 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 APH1BQ8WW43 257 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CORO2AQ92828 525 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CYB5R1Q9UHQ9 305 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 KCNK5O95279 499 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 EPHA1P21709 976 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 OR4N5Q8IXE1 308 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF582Q96NG8 517 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SEC14L6B5MCN3 397 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 FOLR1P15328 257 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 TREML2Q5T2D2 321 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SLX4IPQ5VYV7 408 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 DUSP19Q8WTR2 217 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 HPSE2Q8WWQ2 592 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 FREM3P0C091 2139 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CHRNB4P30926 498 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 KREMEN2Q8NCW0 462 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 HMGB4Q8WW32 186 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 TMEM18Q96B42 140 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 MRGPRX2Q96LB1 330 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SEMA6CQ9H3T2 930 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 STEAP1Q9UHE8 339 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 DUX1O43812 170 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 PHF19Q5T6S3 580 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 WBP2NLQ6ICG8 309 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 MMABQ96EY8 250 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-201ENST00000328333 NUDT9Q9BW91 350 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 DEFB126Q9BYW3 111 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 C8orf89P0DMQ9 161 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 GLYR1Q49A26 553 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-201ENST00000328333 TAS1R3Q7RTX0 852 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 FAM213BQ8TBF2 198 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 AMDHD1Q96NU7 426 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 TGIF2Q9GZN2 237 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 MYOTQ9UBF9 498 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 FOXE1O00358 373 aaPredicted RBP13.41□□□□□ -0.26
COL7A1-201ENST00000328333 GABRPO00591 440 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 PTHP01270 115 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A6P0DMU7 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A5P0DMU8 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A7P0DMV0 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A8P0DMV1 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A9P0DMV2 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 IQCJQ1A5X6 159 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A2Q5DJT8 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A1Q5HYN5 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 GPR155Q7Z3F1 870 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 ZFP41Q8N8Y5 198 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 CT45A3Q8NHU0 189 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 SPOCK3Q9BQ16 436 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 C1GALT1Q9NS00 363 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 GPR160Q9UJ42 338 aa13.41□□□□□ -0.26
COL7A1-201ENST00000328333 PPP1R11O60927 126 aaPredicted RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 MPIG6BO95866 241 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 CPN1P15169 458 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ARL16Q0P5N6 197 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 MEPCEQ7L2J0 689 aaKnown RBP13.4□□□□□ -0.26
COL7A1-201ENST00000328333 C14orf80Q86SX3 495 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 SLC25A46Q96AG3 418 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 C4orf36Q96KX1 117 aa13.4□□□□□ -0.26
COL7A1-201ENST00000328333 ZNF160Q9HCG1 818 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms