RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 NRIP3Q9NQ35 241 aa13.7□□□□□ -0.22
TCOF1-201ENST00000323668 TRABD2BA6NFA1 517 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CXCL10P02778 98 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 AMY2AP04746 511 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 IGFBP4P22692 258 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PKLRP30613 574 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 GALEQ14376 348 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 RNASE10Q5GAN6 216 aaKnown RBP13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CD276Q5ZPR3 534 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 C12orf40Q86WS4 652 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PNLDC1Q8NA58 520 aaKnown RBP13.69□□□□□ -0.22
TCOF1-201ENST00000323668 BADQ92934 168 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 NTNG1Q9Y2I2 539 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PRRT4C9JH25 899 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 H7C2Y5 167 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 HNRNPA2B1P22626 353 aaKnown RBP13.69□□□□□ -0.22
TCOF1-201ENST00000323668 GJA4P35212 333 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CCR6P51684 374 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 TMEFF1Q8IYR6 380 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 OR6V1Q8N148 313 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 SLC35A4Q96G79 324 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 SERINC1Q9NRX5 453 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 B3GNT2Q9NY97 397 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 ZNF337Q9Y3M9 751 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 A0A1B0GWA3 101 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 H0YGG7 62 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 ARF3P61204 181 aaPredicted RBP13.69□□□□□ -0.22
TCOF1-201ENST00000323668 RASGEF1BQ0VAM2 473 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 P2RY14Q15391 338 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 DUSP5Q16690 384 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 UBE2NLQ5JXB2 153 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 SLC18B1Q6NT16 456 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 TMEM99Q8N816 258 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 ANKRD53Q8N9V6 530 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 KCMF1Q9P0J7 381 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 TMPRSS11EQ9UL52 423 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 TVP23AA6NH52 213 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 F5H5P2 479 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 SSX4O60224 188 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 APBB3O95704 486 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CSF1P09603 554 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PGAM2P15259 253 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PRKACBP22694 351 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 FXYD6P3P58550 94 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 HHEXQ03014 270 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CDNFQ49AH0 187 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 CCDC58Q4VC31 144 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 POGLUT1Q8NBL1 392 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 PLA2G12AQ9BZM1 189 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 SDHAF3Q9NRP4 125 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 HPF1Q9NWY4 346 aa13.69□□□□□ -0.22
TCOF1-201ENST00000323668 GOSR2O14653 212 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 PGCP20142 388 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 CCR2P41597 374 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 CLDN12P56749 244 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 GRK1Q15835 563 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ZNF836Q6ZNA1 936 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MAMDC2Q7Z304 686 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 KCTD20Q7Z5Y7 419 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 LSM14AQ8ND56 463 aaKnown RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 OR14A2Q96R54 314 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ZNF436Q9C0F3 470 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MFFQ9GZY8 342 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 STARD5Q9NSY2 213 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 A0A0A6YYC8 382 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 I3L1I5 382 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 UGT2B7P16662 529 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ENDOUP21128 410 aaKnown RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ITGA3P26006 1051 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 FGF9P31371 208 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 SRP9P49458 86 aaKnown RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 PRKXP51817 358 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 CLDN20P56880 219 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 CDKN3Q16667 212 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 TMEM201Q5SNT2 666 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ARHGAP40Q5TG30 622 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 VASH1Q7L8A9 365 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 GALNT11Q8NCW6 608 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 BBS1Q8NFJ9 593 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ADAMTS18Q8TE60 1221 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 WDR34Q96EX3 536 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 FBRSQ9HAH7 460 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MEPEQ9NQ76 525 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 SLC39A1Q9NY26 324 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 GLTPQ9NZD2 209 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MIA3Q5JRA6 1907 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MEGF11A6BM72 1044 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 PPM1DO15297 605 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ICMTO60725 284 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 RAB3DO95716 219 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 PDGFAP04085 211 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 SYPP08247 313 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 H2BFMP0C1H6 154 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 ZNF615Q8N8J6 731 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 TMEM234Q8WY98 164 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 CNRIP1Q96F85 164 aaPredicted RBP13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MED30Q96HR3 178 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 SDF2Q99470 211 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 MNTQ99583 582 aa13.68□□□□□ -0.22
TCOF1-201ENST00000323668 EPHA6Q9UF33 1036 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms