RNA–Protein interactions for RNA: ENST00000278385.10

CD44-202, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 697 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-202ENST00000278385 FAM151BQ6UXP7 276 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LRRC74BQ6ZQY2 392 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PID1Q7Z2X4 250 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 FAM122BQ7Z309 247 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 RNF130Q86XS8 419 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 MMAAQ8IVH4 418 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 CMTM8Q8IZV2 173 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PELI3Q8N2H9 469 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PARP8Q8N3A8 854 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 MFSD9Q8NBP5 474 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 ZNF248Q8NDW4 579 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 ZNF548Q8NEK5 533 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 NFAM1Q8NET5 270 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 VN1R2Q8NFZ6 395 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OR6M1Q8NGM8 313 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 WDR36Q8NI36 951 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 PHF21AQ96BD5 680 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 ZBTB9Q96C00 473 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 OTUB2Q96DC9 234 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 MTERF3Q96E29 417 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 C3orf30Q96M34 536 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 P2RY13Q9BPV8 354 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 SLC30A2Q9BRI3 323 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 C7orf50Q9BRJ6 194 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 RAB11FIP5Q9BXF6 653 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 DUSP16Q9BY84 665 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 LRRN3Q9H3W5 708 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 C5orf66Q9H5L9 145 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 IMP3Q9NV31 184 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 MIOSQ9NXC5 875 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PLEK2Q9NYT0 353 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 B3GAT1Q9P2W7 334 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PLEKHB1Q9UF11 243 aaPredicted RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 CLEC2DQ9UHP7 191 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 RNF6Q9Y252 685 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 PLLPQ9Y342 182 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 STARD10Q9Y365 291 aa4.09□□□□□ -1.75
CD44-202ENST00000278385 SAMHD1Q9Y3Z3 626 aaKnown RBP4.09□□□□□ -1.75
CD44-202ENST00000278385 TTC3P53804 2025 aa4.09□□□□□ -1.76
CD44-202ENST00000278385 TRBV5-7A0A0A0MS05 114 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ATP6AP2A0A1C7CYW4 349 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 HYKKA2RU49 373 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 LRRC30A6NM36 301 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ARHGEF33A8MVX0 844 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 FAM90A26D6RGX4 464 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 PRAMEF26H0Y7S4 382 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 CYB561D2O14569 222 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 CLOCKO15516 846 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 B4GALT5O43286 388 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 OR10H3O60404 316 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 OR2J3O76001 311 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 NEURL1O76050 574 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 MT-CO3P00414 261 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 DCNP07585 359 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 UBCP0CG48 685 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 UNGP13051 313 aaPredicted RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 UQCRBP14927 111 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 MSH3P20585 1137 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 FPR3P25089 353 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 PCSK6P29122 969 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 EIF2S3P41091 472 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 NKX2-1P43699 371 aaPredicted RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 TUFMP49411 452 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 STK19P49842 368 aaPredicted RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 PGGT1BP53609 377 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ATP1B3P54709 279 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 PSMD4P55036 377 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 PEX3P56589 373 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 HERVK_113P63132 956 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ERVK-8P63133 956 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ADARB1P78563 741 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 OGDHQ02218 1023 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 FAM27E3Q08E93 113 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 IFFO1Q0D2I5 559 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ELAVL2Q12926 359 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 IL17AQ16552 155 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 GOLGA7BQ2TAP0 167 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ACSF3Q4G176 576 aaPredicted RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 KLHL22Q53GT1 634 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 RNASE12Q5GAN4 147 aaKnown RBP4.08□□□□□ -1.76
CD44-202ENST00000278385 ZNF691Q5VV52 312 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 SLX4IPQ5VYV7 408 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 SLC22A10Q63ZE4 541 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 FRG2Q64ET8 278 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 UQCC3Q6UW78 93 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 DEF8Q6ZN54 512 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 DNAH12Q6ZR08 3092 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 COMMD2Q86X83 199 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 SFR1Q86XK3 245 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 CATSPERDQ86XM0 798 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 GPSM1Q86YR5 675 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 SFTPA2Q8IWL1 248 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 TMEM99Q8N816 258 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 C8orf31Q8N9H6 132 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 ZNF680Q8NEM1 530 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 SDR9C7Q8NEX9 313 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 OR4K1Q8NGD4 311 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 OR1F12Q8NHA8 337 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 NANPQ8TBE9 248 aa4.08□□□□□ -1.76
CD44-202ENST00000278385 NAT6Q93015 286 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms