RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 GNB5O14775 395 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 XPNPEP2O43895 674 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 HCN1O60741 890 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SAGP10523 405 aaPredicted RBP12.83□□□□□ -0.35
SS18-201ENST00000269137 EEF1B2P24534 225 aaKnown RBP12.83□□□□□ -0.35
SS18-201ENST00000269137 HTR3AP46098 478 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SLC9A3P48764 834 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 PCYT1AP49585 367 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SMN1Q16637 294 aaKnown RBP12.83□□□□□ -0.35
SS18-201ENST00000269137 TMEM201Q5SNT2 666 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SLC25A30Q5SVS4 291 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SLC30A6Q6NXT4 461 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 IL20RBQ6UXL0 311 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 TMEM156Q8N614 296 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 PAQR8Q8TEZ7 354 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 LIPHQ8WWY8 451 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 PSMF1Q92530 271 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 SGCZQ96LD1 299 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 TSC22D3Q99576 134 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 TEX12Q9BXU0 123 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 PRRG3Q9BZD7 231 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 OR52D1Q9H346 318 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 TBC1D23Q9NUY8 699 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 PPP4R1LQ9P1A2 415 aa12.83□□□□□ -0.35
SS18-201ENST00000269137 B4DXG7 233 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 CXCR1P25024 350 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 POLR2HP52434 150 aaKnown RBP12.83□□□□□ -0.36
SS18-201ENST00000269137 FXYD6P3P58550 94 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 SLC35A2P78381 396 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 EGR4Q05215 589 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 DCAF10Q5QP82 559 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 SMARCD3Q6STE5 483 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 CNTRLQ7Z7A1 2325 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 OAFQ86UD1 273 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 FAM26EQ8N5C1 309 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 OR2T33Q8NG76 320 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 OR13C2Q8NGS9 318 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 FANK1Q8TC84 345 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 IPCEF1Q8WWN9 437 aaPredicted RBP12.83□□□□□ -0.36
SS18-201ENST00000269137 SAMD8Q96LT4 415 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 Q96MT0 163 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 SLC38A2Q96QD8 506 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 UBQLN3Q9H347 655 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 CLN6Q9NWW5 311 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 TVP23BQ9NYZ1 205 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 NDUFA13Q9P0J0 144 aa12.83□□□□□ -0.36
SS18-201ENST00000269137 SMIM31A0A1B0GVY4 71 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 ANKRD33BA6NCL7 494 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 C2orf72A6NCS6 295 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 M0R129 80 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 GMFGO60234 142 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 MRPS14O60783 128 aaKnown RBP12.82□□□□□ -0.36
SS18-201ENST00000269137 OR7A10O76100 309 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 HMGN1P05114 100 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 LIPCP11150 499 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 BMP7P18075 431 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 FUT1P19526 365 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 FHL1Q13642 323 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 RTP5Q14D33 572 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 OCLNQ16625 522 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 PGGHGQ32M88 737 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 ZBED5Q49AG3 693 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 CLEC12AQ5QGZ9 265 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 ACER2Q5QJU3 275 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 OR5M10Q6IEU7 315 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 GPALPP1Q8IXQ4 340 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 TCEANCQ8N8B7 351 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 OR52L1Q8NGH7 329 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 OR4Q3Q8NH05 313 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 FGF11Q92914 225 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 ANGPTL4Q9BY76 406 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 CCNB1IP1Q9NPC3 277 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 MED17Q9NVC6 651 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 PAK1IP1Q9NWT1 392 aaPredicted RBP12.82□□□□□ -0.36
SS18-201ENST00000269137 HPF1Q9NWY4 346 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 MED11Q9P086 117 aa12.82□□□□□ -0.36
SS18-201ENST00000269137 CDV3Q9UKY7 258 aaKnown RBP12.82□□□□□ -0.36
SS18-201ENST00000269137 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 PTGES3LE9PB15 166 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 PRKYO43930 277 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 FAM20BO75063 409 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 HTR1AP08908 422 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 PRKCAP17252 672 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 ALDH3B2P48448 385 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 CAMK2BQ13554 666 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SNAPC1Q16533 368 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SLC25A53Q5H9E4 307 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SLC22A10Q63ZE4 541 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 RTL4Q6ZR62 310 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SLC46A3Q7Z3Q1 461 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SATL1Q86VE3 508 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 LSRQ86X29 649 aaPredicted RBP12.81□□□□□ -0.36
SS18-201ENST00000269137 ADGRG3Q86Y34 549 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 LNX2Q8N448 690 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 FADS6Q8N9I5 356 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 SGCDQ92629 289 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 THOC3Q96J01 351 aaKnown RBP12.81□□□□□ -0.36
SS18-201ENST00000269137 FER1L6-AS2Q96M78 137 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 TNFRSF13CQ96RJ3 184 aa12.81□□□□□ -0.36
SS18-201ENST00000269137 IL4I1Q96RQ9 567 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms