RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 FUT7Q11130 342 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 FXNQ16595 210 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 COL28A1Q2UY09 1125 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF528Q3MIS6 628 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 ARMC4Q5T2S8 1044 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 RHOXF1Q8NHV9 184 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 THOC3Q96J01 351 aaKnown RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 VSTM2LQ96N03 204 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 BARD1Q99728 777 aaKnown RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 FAM183AA6NL82 134 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 PIP5K1CO60331 668 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 ACVR1BP36896 505 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 DAP3P51398 398 aaKnown RBP10.65□□□□□ -0.7
VPS4A-201ENST00000254950 FGFBP1Q14512 234 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 LINC00696Q6ZRV3 163 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 SHFQ7M4L6 423 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 TTTY10Q9BZA0 68 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 PLGRKTQ9HBL7 147 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 A4GNTQ9UNA3 340 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 CORINQ9Y5Q5 1042 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 B3GALT1Q9Y5Z6 326 aa10.65□□□□□ -0.7
VPS4A-201ENST00000254950 TCRBV16S1A1N1A0A5B0 115 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 CDK1P06493 297 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 MVDP53602 400 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 CSNK2A1P68400 391 aaPredicted RBP10.65□□□□□ -0.71
VPS4A-201ENST00000254950 RAB40BQ12829 278 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF846Q147U1 533 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 EBPQ15125 230 aaKnown RBP10.65□□□□□ -0.71
VPS4A-201ENST00000254950 MAPK11Q15759 364 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 LACC1Q8IV20 430 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 SLC43A2Q8N370 569 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 TM9SF4Q92544 642 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 KATNB1Q9BVA0 655 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 SNTG1Q9NSN8 517 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 FBXO34Q9NWN3 711 aa10.65□□□□□ -0.71
VPS4A-201ENST00000254950 NDRG4Q9ULP0 352 aaKnown RBP10.65□□□□□ -0.71
VPS4A-201ENST00000254950 C12orf71A8MTZ7 269 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 B4E171 279 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GALR2O43603 387 aaPredicted RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF883P0CG24 379 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ABCD3P28288 659 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PYCR1P32322 319 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GRK5P34947 590 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 TSPAN7P41732 249 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 FZD5Q13467 585 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PRSS53Q2L4Q9 553 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 KLHL26Q53HC5 615 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 EEF1A1P5Q5VTE0 462 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ENTHD1Q8IYW4 607 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 NSMAFQ92636 917 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ISOC1Q96CN7 298 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ARSGQ96EG1 525 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 MBOAT4Q96T53 435 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 TMED9Q9BVK6 235 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GABARAPL3Q9BY60 117 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 HDHD2Q9H0R4 259 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 UBQLN3Q9H347 655 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PI4KAP42356 2102 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 A0A1W2PPL8 197 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 OPN1LWP04000 364 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 LCKP06239 509 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 HTR1AP08908 422 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 F8A1P23610 371 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 AQP2P41181 271 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 EIF1AXP47813 144 aaKnown RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 DNASE1L1P49184 302 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PSG6Q00889 435 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 CPEB4Q17RY0 729 aaKnown RBP eCLIP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 TMEM176BQ3YBM2 270 aaPredicted RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 CROCCP3Q8IVE0 287 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 OR2Y1Q8NGV0 311 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ZMYND19Q96E35 227 aaPredicted RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 SGCZQ96LD1 299 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ARHGAP9Q9BRR9 750 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 WDR12Q9GZL7 423 aaKnown RBP10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PCDHGB2Q9Y5G2 931 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 A0A1W2PPW3 197 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ITGA10O75578 1167 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ARL6IP5O75915 188 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 DDAH2O95865 285 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 CTSBP07858 339 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 NAGAP17050 411 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 TBXA2RP21731 343 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 CRABP1P29762 137 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ZNF84P51523 738 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ISL1P61371 349 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ACTA2P62736 377 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 ACTG2P63267 376 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GABREP78334 506 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 MC2RQ01718 297 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 LIPKQ5VXJ0 399 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 CARD17Q5XLA6 110 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 C1orf94Q6P1W5 598 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 SPATC1Q76KD6 591 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 NDUFAF7Q7L592 441 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 GALNT15Q8N3T1 639 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 PFN4Q8NHR9 129 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 TCF7L1Q9HCS4 588 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 BRD7Q9NPI1 651 aa10.64□□□□□ -0.71
VPS4A-201ENST00000254950 RPRD1BQ9NQG5 326 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms