RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 ATE1O95260 518 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 WISP3O95389 354 aaPredicted RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 CDK1P06493 297 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 MAN2A2P49641 1150 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 RPS23P62266 143 aaKnown RBP12.63□□□□□ -0.39
LDLR-201ENST00000252444 CDK5R2Q13319 367 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 NADK2Q4G0N4 442 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 SLC35F1Q5T1Q4 408 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 FRMD1Q8N878 549 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TBX5Q99593 518 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 HCAR1Q9BXC0 346 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 CST11Q9H112 138 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 KLHL31Q9H511 634 aa12.63□□□□□ -0.39
LDLR-201ENST00000252444 TANC1Q9C0D5 1861 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 TRBV2A0A0J9YWF9 115 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 D6RAR5 112 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 HMGN4O00479 90 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 FGF17O60258 216 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 KIAA0513O60268 411 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 NKX2-2O95096 273 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 ITGA5P08648 1049 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 GRB2P62993 217 aaKnown RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 MLLT11Q13015 90 aaPredicted RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 EIF2B1Q14232 305 aaKnown RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 SLX4IPQ5VYV7 408 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 EGFL6Q8IUX8 553 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 TAMM41Q96BW9 452 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 THOC3Q96J01 351 aaKnown RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 HRASLS5Q96KN8 279 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 OR2A5Q96R48 311 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 ZNF587Q96SQ5 575 aaPredicted RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 CCDC32Q9BV29 185 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 DDA1Q9BW61 102 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 ACTR6Q9GZN1 396 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 SLC25A19Q9HC21 320 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 TMEM138Q9NPI0 162 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 SLAMF7Q9NQ25 335 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 IER3IP1Q9Y5U9 82 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 MEN1O00255 615 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 PPP2R2BQ00005 443 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 H1FNTQ75WM6 255 aaPredicted RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 CDCP1Q9H5V8 836 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 BRD7Q9NPI1 651 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 A0A1B0GWA3 101 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 CDHR4A6H8M9 788 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 KCNK2O95069 426 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 GCH1P30793 250 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 ARHGDIBP52566 201 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 OR2A2Q6IF42 318 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 PLBD1Q6P4A8 553 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 LINGO2Q7L985 606 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 GALNT6Q8NCL4 622 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 C17orf47Q8NEP4 570 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 AKAP1Q92667 903 aaKnown RBP eCLIP12.62□□□□□ -0.392e-8■■■■□ 25.4
LDLR-201ENST00000252444 RAB39BQ96DA2 213 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 PDCD10Q9BUL8 212 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 KCMF1Q9P0J7 381 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 SCP2D1Q9UJQ7 156 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 CARD8Q9Y2G2 431 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 AGAP5A6NIR3 686 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 RPP14O95059 124 aaKnown RBP12.62□□□□□ -0.39
LDLR-201ENST00000252444 ALPLP05186 524 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 GUSBP08236 651 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 CD14P08571 375 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 RAB40ALP0C0E4 278 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 CDH15P55291 814 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 GDF7Q7Z4P5 450 aa12.62□□□□□ -0.39
LDLR-201ENST00000252444 A0A1W2PQD3 144 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 LCMT2O60294 686 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 RAB11BQ15907 218 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 SATL1Q86VE3 508 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 GRAMD2AQ8IUY3 354 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 JAGN1Q8N5M9 183 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 TMEM102Q8N9M5 508 aaPredicted RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 KCTD12Q96CX2 325 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 WDR77Q9BQA1 342 aaPredicted RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 CCDC59Q9P031 241 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 LHX6Q9UPM6 363 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 GGT3PA6NGU5 568 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 METTL15A6NJ78 407 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 RAD51DO75771 328 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 PRKACBP22694 351 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 NOVA1P51513 510 aaKnown RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 GNG2P59768 71 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ARFRP1Q13795 201 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 CCDC92Q53HC0 331 aaPredicted RBP12.61□□□□□ -0.39
LDLR-201ENST00000252444 C1orf140Q5VVS0 124 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ZNF547Q8IVP9 402 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 OR4K13Q8NH42 304 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ULBP2Q9BZM5 246 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 WWTR1Q9GZV5 400 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ISYNA1Q9NPH2 558 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 ACER3Q9NUN7 267 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 MCUBQ9NWR8 336 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 COPZ2Q9P299 210 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 DPPA5A6NC42 116 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 CBR3O75828 277 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 IGHV4-34P06331 123 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 LPLP06858 475 aa12.61□□□□□ -0.39
LDLR-201ENST00000252444 MAOAP21397 527 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 195.6 ms