RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 ZNF446Q9NWS9 450 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TXNL4BQ9NX01 149 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 KCMF1Q9P0J7 381 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SIRPGQ9P1W8 387 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ANKRD11Q6UB99 2663 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SBF1O95248 1867 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SPATA31A1Q5TZJ5 1347 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TPST2O60704 377 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SHOX2O60902 331 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MRPL33O75394 65 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZFAND5O76080 213 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 FGF18O76093 207 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLDN7O95471 211 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RECKO95980 971 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OAS1P00973 400 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SERPINA7P05543 415 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RAP2AP10114 183 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GGT1P19440 569 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TACR2P21452 398 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RAP2BP61225 183 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SOHLH1Q5JUK2 328 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PSAPL1Q6NUJ1 521 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LPCAT3Q6P1A2 487 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 USP17L6PQ6QN14 398 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZCCHC23Q6ZST2 131 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CUZD1Q86UP6 607 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MFSD9Q8NBP5 474 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR13C5Q8NGS8 318 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR13C2Q8NGS9 318 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR4K15Q8NH41 348 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ELMOD3Q96FG2 381 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 WDR92Q96MX6 357 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 DHX33Q9H6R0 707 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RNF19AQ9NV58 838 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RPS10-NUDT3A0A1W2PQS6 291 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 A8MU76 341 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HDAC3O15379 428 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NOBOXO60393 691 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 EIF1BO60739 113 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF780AO75290 641 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ADORA3P0DMS8 318 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RAB3AP20336 220 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GNRHRP30968 328 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR1D2P34982 312 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 IRS1P35568 1242 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CASP3P42574 277 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RPS10P46783 165 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PPP4CP60510 307 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MPP1Q00013 466 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF239Q16600 458 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 Q1RN00 199 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZACNQ401N2 412 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TOR2AQ5JU69 321 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TRIM46Q7Z4K8 759 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GALNT10Q86SR1 603 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NAA40Q86UY6 237 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 RBMXL3Q8N7X1 1067 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BOLLQ8N9W6 283 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR5K1Q8NHB7 308 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LINC01599Q8WXQ3 324 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SMIM12Q96EX1 92 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GMPPAQ96IJ6 420 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MS4A4AQ96JQ5 239 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC41A2Q96JW4 573 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TIMP4Q99727 224 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SEMA3CQ99985 751 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR8D2Q9GZM6 311 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PCED1AQ9H1Q7 454 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NIT2Q9NQR4 276 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MED17Q9NVC6 651 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 U3KQV3 271 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PLXNA2O75051 1894 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF587BE7ETH6 402 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PHOX2AO14813 284 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ARPC5O15511 151 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BCKDHBP21953 392 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BLVRBP30043 206 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NKX3-2P78367 333 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 IRF9Q00978 393 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF33BQ06732 778 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 HYAL1Q12794 435 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LASP1Q14847 261 aaKnown RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 NFATC4Q14934 902 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 LBHQ53QV2 105 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C9orf152Q5JTZ5 239 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PAGE3Q5JUK9 113 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OTOP1Q7RTM1 612 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 OR4D6Q8NGJ1 314 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ZNF418Q8TF45 676 aaPredicted RBP2.62□□□□□ -1.99
SCN1A-219ENST00000641575 BLNKQ8WV28 456 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 CLEC4DQ8WXI8 215 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 C7orf26Q96N11 449 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 GPA33Q99795 319 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 MAGEH1Q9H213 219 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 POT1Q9NUX5 634 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 SLC17A6Q9P2U8 582 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 PCDHGA7Q9Y5G6 932 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 TRGV8A0A0C4DH27 118 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 A0A1W2PS29 197 aa2.62□□□□□ -1.99
SCN1A-219ENST00000641575 ADAM11O75078 769 aa2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms