RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 EIF1ADQ8N9N8 165 aaKnown RBP17.07■□□□□ 0.32
CLN3-262ENST00000637699 C10orf105Q8TEF2 133 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 OR5P2Q8WZ92 322 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 OR7D2Q96RA2 312 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 C19orf24Q9BVV8 132 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 EMC3Q9P0I2 261 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 GIMAP2Q9UG22 337 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 NOSIPQ9Y314 301 aaKnown RBP17.07■□□□□ 0.32
CLN3-262ENST00000637699 SERINC4A6NH21 518 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 HAX1O00165 279 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 ETV2O00321 342 aaPredicted RBP17.06■□□□□ 0.32
CLN3-262ENST00000637699 LMX1BO60663 402 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 LY6HO94772 140 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 C6orf47O95873 294 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 SESN3P58005 492 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 MERTKQ12866 999 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 GPR68Q15743 365 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 KANK2Q63ZY3 851 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 RNF165Q6ZSG1 346 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 TMPPEQ6ZT21 453 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 MTDHQ86UE4 582 aaKnown RBP17.06■□□□□ 0.32
CLN3-262ENST00000637699 C10orf107Q8IVU9 208 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 OR5D16Q8NGK9 328 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 OR5AK3PQ8NH89 298 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 APH1AQ96BI3 265 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 DNAJA3Q96EY1 480 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 SDF2Q99470 211 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 INPP5KQ9BT40 448 aa17.06■□□□□ 0.32
CLN3-262ENST00000637699 GATA5Q9BWX5 397 aaPredicted RBP17.06■□□□□ 0.32
CLN3-262ENST00000637699 TMEM114B3SHH9 223 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 TMEM233B4DJY2 109 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 H7C417 338 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 TFPIP10646 304 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 USF1P22415 310 aaPredicted RBP17.05■□□□□ 0.32
CLN3-262ENST00000637699 CRHR1P34998 444 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 CSNK2A1P68400 391 aaPredicted RBP17.05■□□□□ 0.32
CLN3-262ENST00000637699 SKP2Q13309 424 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 SYT14P1Q58G82 188 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 ABLIM2Q6H8Q1 611 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 IL17RELQ6ZVW7 336 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 PSMA8Q8TAA3 256 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 ST8SIA1Q92185 356 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 PROX1Q92786 737 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 LAT2Q9GZY6 243 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 ASB6Q9NWX5 421 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 ATP23Q9Y6H3 246 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 MALRD1Q5VYJ5 2156 aa17.05■□□□□ 0.32
CLN3-262ENST00000637699 HEATR1Q9H583 2144 aaKnown RBP17.05■□□□□ 0.32
CLN3-262ENST00000637699 IGKV3D-15A0A087WSY6 115 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 PIP5K1BO14986 540 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 CFLARO15519 480 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 PEX11AO75192 247 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 NTF4P34130 210 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 RPL3P39023 403 aaKnown RBP17.04■□□□□ 0.32
CLN3-262ENST00000637699 EFNA4P52798 201 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 FOXG1P55316 489 aaPredicted RBP17.04■□□□□ 0.32
CLN3-262ENST00000637699 RPS26P62854 115 aaKnown RBP17.04■□□□□ 0.32
CLN3-262ENST00000637699 LSM11P83369 360 aaKnown RBP eCLIP17.04■□□□□ 0.32
CLN3-262ENST00000637699 PTGR1Q14914 329 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 LSM12Q3MHD2 195 aaKnown RBP17.04■□□□□ 0.32
CLN3-262ENST00000637699 ZNF544Q6NX49 715 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 OLIG3Q7RTU3 272 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 TWIST2Q8WVJ9 160 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 UBLCP1Q8WVY7 318 aaPredicted RBP17.04■□□□□ 0.32
CLN3-262ENST00000637699 CHODLQ9H9P2 273 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 TAS2R16Q9NYV7 291 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 KCNE5Q9UJ90 142 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 TRAF6Q9Y4K3 522 aa17.04■□□□□ 0.32
CLN3-262ENST00000637699 CENPVL1A0A0U1RR11 272 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 ZNF716A6NP11 495 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 COPEO14579 308 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 FCMRO60667 390 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 CSTAP01040 98 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 CHRNGP07510 517 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 UBTFL6P0CB48 400 aaPredicted RBP17.03■□□□□ 0.32
CLN3-262ENST00000637699 BMP4P12644 408 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 SRD5A1P18405 259 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 PGCP20142 388 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 MAPK1P28482 360 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 CHRNB3Q05901 458 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 PDK3Q15120 406 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 GABRA6Q16445 453 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 C9orf135Q5VTT2 229 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 CNPY4Q8N129 248 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 KRTCAP2Q8N6L1 136 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 SFXN5Q8TD22 340 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 TMEM234Q8WY98 164 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 ZHX1-C8orf76Q96EF9 292 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 MUS81Q96NY9 551 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 TRMOQ9BU70 441 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 NMUR2Q9GZQ4 415 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 ACER3Q9NUN7 267 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 ATAD3AQ9NVI7 634 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 MKLN1Q9UL63 735 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 PMF1-BGLAPU3KQ54 211 aa17.03■□□□□ 0.32
CLN3-262ENST00000637699 SMIM23A6NLE4 172 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 DNAJA2O60884 412 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 MRPL33O75394 65 aaKnown RBP17.02■□□□□ 0.32
CLN3-262ENST00000637699 CSF3P09919 207 aa17.02■□□□□ 0.32
CLN3-262ENST00000637699 IGFBP5P24593 272 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms