RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PRKAR1BP31321 381 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 IST1P53990 364 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 DLX5P56178 289 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 CLDN18P56856 261 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 PLAURQ03405 335 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 MERTKQ12866 999 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 SF3B4Q15427 424 aaKnown RBP eCLIP16.03■□□□□ 0.162e-7■■■■□ 24.8
CLN3-247ENST00000636351 ACSF3Q4G176 576 aaPredicted RBP16.03■□□□□ 0.16
CLN3-247ENST00000636351 FAM91A1Q658Y4 838 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 ERICH5Q6P6B1 374 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 CALHM3Q86XJ0 350 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 LIX1LQ8IVB5 337 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 CLIP4Q8N3C7 705 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 ATP6V1C2Q8NEY4 427 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 OR2T12Q8NG77 320 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 POC1BQ8TC44 478 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 SLC26A7Q8TE54 656 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 ST8SIA1Q92185 356 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 MRGPRX4Q96LA9 322 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 TRIB1Q96RU8 372 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 GPATCH1Q9BRR8 931 aaKnown RBP16.03■□□□□ 0.16
CLN3-247ENST00000636351 CMTM6Q9NX76 183 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 USP22Q9UPT9 525 aa16.03■□□□□ 0.16
CLN3-247ENST00000636351 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 OPN1SWP03999 348 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 OPN1LWP04000 364 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 CPN1P15169 458 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ZNF708P17019 499 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ELK4P28324 431 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 SFTPDP35247 375 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 IDH2P48735 452 aaKnown RBP16.02■□□□□ 0.16
CLN3-247ENST00000636351 GZMMP51124 257 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 PCBP3P57721 371 aaKnown RBP16.02■□□□□ 0.16
CLN3-247ENST00000636351 SESN3P58005 492 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 PSME3P61289 254 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 EPS8Q12929 822 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 PPP4R4Q6NUP7 873 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 DHRS4L2Q6PKH6 230 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ZNF550Q7Z398 422 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 PATL1Q86TB9 770 aaKnown RBP16.02■□□□□ 0.16
CLN3-247ENST00000636351 FITM2Q8N6M3 262 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 SMYD1Q8NB12 490 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 TUBA1CQ9BQE3 449 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ACER3Q9NUN7 267 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 KLHL28Q9NXS3 571 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ADA2Q9NZK5 511 aa16.02■□□□□ 0.16
CLN3-247ENST00000636351 ITPR3Q14573 2671 aa16.02■□□□□ 0.15
CLN3-247ENST00000636351 PHF3Q92576 2039 aaKnown RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 ELOVL7A1L3X0 281 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 H0YC42 278 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 NME4O00746 187 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 EIF1AYO14602 144 aaKnown RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 FRS3O43559 492 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 IL11P20809 199 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 ADH6P28332 368 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 TPD52P55327 224 aaPredicted RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 CLDN20P56880 219 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 EEFSECP57772 596 aaKnown RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 RPS3AP61247 264 aaKnown RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 NCALDP61601 193 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 COPZ1P61923 177 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 RAC1P63000 192 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 LIPEQ05469 1076 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 SELENBP1Q13228 472 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 SNTB1Q13884 538 aaKnown RBP16.01■□□□□ 0.15
CLN3-247ENST00000636351 KRT72Q14CN4 511 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 BCL2A1Q16548 175 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 KRTAP21-3Q3LHN1 58 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 C3orf33Q6P1S2 294 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 PLEKHM3Q6ZWE6 761 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 GRAMD2AQ8IUY3 354 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 SLC15A3Q8IY34 581 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 MICU2Q8IYU8 434 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 CADM2Q8N3J6 435 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 ZNF524Q96C55 264 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 POM121Q96HA1 1249 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 ZNF583Q96ND8 569 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 SPAG4Q9NPE6 437 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 SERINC1Q9NRX5 453 aa16.01■□□□□ 0.15
CLN3-247ENST00000636351 GJE1A6NN92 205 aa16■□□□□ 0.15
CLN3-247ENST00000636351 CLCA1A8K7I4 914 aa16■□□□□ 0.15
CLN3-247ENST00000636351 M0QX08 132 aa16■□□□□ 0.15
CLN3-247ENST00000636351 GSTA4O15217 222 aa16■□□□□ 0.15
CLN3-247ENST00000636351 DNAJA2O60884 412 aa16■□□□□ 0.15
CLN3-247ENST00000636351 ADAM11O75078 769 aa16■□□□□ 0.15
CLN3-247ENST00000636351 MFN2O95140 757 aa16■□□□□ 0.15
CLN3-247ENST00000636351 CD99P14209 185 aa16■□□□□ 0.15
CLN3-247ENST00000636351 PSMA4P25789 261 aaKnown RBP16■□□□□ 0.15
CLN3-247ENST00000636351 SLC7A1P30825 629 aa16■□□□□ 0.15
CLN3-247ENST00000636351 EIF1AXP47813 144 aaKnown RBP16■□□□□ 0.15
CLN3-247ENST00000636351 MNAT1P51948 309 aa16■□□□□ 0.15
CLN3-247ENST00000636351 DMTNQ08495 405 aa16■□□□□ 0.15
CLN3-247ENST00000636351 SLC25A35Q3KQZ1 300 aa16■□□□□ 0.15
CLN3-247ENST00000636351 LRRC23Q53EV4 343 aaPredicted RBP16■□□□□ 0.15
CLN3-247ENST00000636351 SLC25A53Q5H9E4 307 aa16■□□□□ 0.15
CLN3-247ENST00000636351 C8orf82Q6P1X6 216 aaPredicted RBP16■□□□□ 0.15
CLN3-247ENST00000636351 GRINAQ7Z429 371 aa16■□□□□ 0.15
CLN3-247ENST00000636351 P4HA3Q7Z4N8 544 aa16■□□□□ 0.15
CLN3-247ENST00000636351 LACC1Q8IV20 430 aa16■□□□□ 0.15
CLN3-247ENST00000636351 LILRA2Q8N149 483 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms