RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 FAAHO00519 579 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 CXCR1P25024 350 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 RHAGQ02094 409 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 ZNF117Q03924 483 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 NR1D2Q14995 579 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 SPATS1Q496A3 300 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 HES3Q5TGS1 186 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 ZNF773Q6PK81 442 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 ARHGEF39Q8N4T4 335 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 GOLM1Q8NBJ4 401 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 OR8K3Q8NH51 312 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 SFXN5Q8TD22 340 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 THSD1Q9NS62 852 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 DNAJB12Q9NXW2 375 aaKnown RBP9.64□□□□□ -0.87
VPS11-208ENST00000621676 NPFFR2Q9Y5X5 522 aa9.64□□□□□ -0.87
VPS11-208ENST00000621676 SPIN1Q9Y657 262 aaPredicted RBP9.64□□□□□ -0.87
VPS11-208ENST00000621676 SPG11Q96JI7 2443 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 EIF1AYO14602 144 aaKnown RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 ARHGEF9O43307 516 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 SLC25A12O75746 678 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 NKX2-2O95096 273 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 IGHV3-9P01782 118 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 UBL4AP11441 157 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 CELP19835 753 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 GSTM2P28161 218 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 PSMB10P40306 273 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 DNASE1L1P49184 302 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 NUP107P57740 925 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ZNF91Q05481 1191 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 RHBDD2Q6NTF9 364 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 CCDC80Q76M96 950 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 RHOXF1Q8NHV9 184 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ACOT11Q8WXI4 607 aaPredicted RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 DACH2Q96NX9 599 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 KATNB1Q9BVA0 655 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 HES7Q9BYE0 225 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 RACGAP1Q9H0H5 632 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 UBQLN3Q9H347 655 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 RPRD1BQ9NQG5 326 aaKnown RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 IFT52Q9Y366 437 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 EML6Q6ZMW3 1958 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 A0A1B0GTH9 108 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 H3BMQ9 156 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ITGA10O75578 1167 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 AZGP1P25311 298 aaKnown RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 PCYT1AP49585 367 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 STARP49675 285 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ENTPD1P49961 510 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 SLC3A1Q07837 685 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ELOAQ14241 798 aaKnown RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 MLC1Q15049 377 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ELAVL1Q15717 326 aaKnown RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 ETFDHQ16134 617 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 COL28A1Q2UY09 1125 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 FAM27D1Q5T7N8 215 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ZNF770Q6IQ21 691 aaPredicted RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 WDR74Q6RFH5 385 aaPredicted RBP9.63□□□□□ -0.87
VPS11-208ENST00000621676 NATD1Q8N6N6 113 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ANKK1Q8NFD2 765 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 OR4D9Q8NGE8 314 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 OR52L1Q8NGH7 329 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ZNF675Q8TD23 568 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ZNRF4Q8WWF5 429 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 RNFT2Q96EX2 444 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 C5orf34Q96MH7 638 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 COG8Q96MW5 612 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 SPSB2Q99619 263 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 CENPOQ9BU64 300 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 OCEL1Q9H607 264 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 NANSQ9NR45 359 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 FREM1Q5H8C1 2179 aa9.63□□□□□ -0.87
VPS11-208ENST00000621676 ZNF99A8MXY4 864 aaPredicted RBP9.62□□□□□ -0.87
VPS11-208ENST00000621676 C9J4A7 227 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 J3QLW9 94 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 ZNF264O43296 627 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 HLA-DOBP13765 273 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 ZNF19P17023 458 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 PAICSP22234 425 aaKnown RBP9.62□□□□□ -0.87
VPS11-208ENST00000621676 ITGA3P26006 1051 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 ACAA2P42765 397 aaKnown RBP9.62□□□□□ -0.87
VPS11-208ENST00000621676 BIKQ13323 160 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 AQP6Q13520 282 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 APOFQ13790 326 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 SERTAD2Q14140 314 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 RNASE12Q5GAN4 147 aaKnown RBP9.62□□□□□ -0.87
VPS11-208ENST00000621676 SPINK14Q6IE38 97 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 SLC35D2Q76EJ3 337 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 BTLAQ7Z6A9 289 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 ANKRD37Q7Z713 158 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 FAR1Q8WVX9 515 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 NRBF2Q96F24 287 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 PRSS27Q9BQR3 290 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 BCL2L10Q9HD36 194 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 PARD6AQ9NPB6 346 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 POLE4Q9NR33 117 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 UBQLN4Q9NRR5 601 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 MED29Q9NX70 200 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 KLHL13Q9P2N7 655 aa9.62□□□□□ -0.87
VPS11-208ENST00000621676 ZNF223Q9UK11 482 aaPredicted RBP9.62□□□□□ -0.87
VPS11-208ENST00000621676 FBXL2Q9UKC9 423 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms