RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 NSUN5P2Q63ZY6 315 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 PCYOX1LQ8NBM8 494 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 RELL2Q8NC24 303 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-202ENST00000616974 BCAS4Q8TDM0 211 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 UCN2Q96RP3 112 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 OSGIN1Q9UJX0 560 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 AKAP9Q99996 3911 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 C7orf72A4D263 438 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 CFAP73A6NFT4 308 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 RAMP1O60894 148 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 ETS2P15036 469 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF17P17021 662 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 BMP5P22003 454 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 ENPP1P22413 925 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 TACR3P29371 465 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 PCGF2P35227 344 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 MAGEA8P43361 318 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 PSME3P61289 254 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 TXNL4AP83876 142 aaKnown RBP12.1□□□□□ -0.47
LINC00540-202ENST00000616974 SLC25A53Q5H9E4 307 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 GKAP1Q5VSY0 366 aaPredicted RBP12.1□□□□□ -0.47
LINC00540-202ENST00000616974 ANKS4BQ8N8V4 417 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 EXOSC3Q9NQT5 275 aaKnown RBP12.1□□□□□ -0.47
LINC00540-202ENST00000616974 CALML5Q9NZT1 146 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 CORO2BQ9UQ03 480 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 RTTNQ86VV8 2226 aa12.1□□□□□ -0.47
LINC00540-202ENST00000616974 A0A087WZY1 265 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 TMEM72A0PK05 275 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 TMEM247A6NEH6 219 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 PRORSD1PA6NEY8 169 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 AHRRA9YTQ3 701 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 THY1P04216 161 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 THBS1P07996 1170 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 TCN1P20061 433 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 PGCP20142 388 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 EDNRAP25101 427 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 GSK3BP49841 420 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 SUMO3P55854 103 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 RAC1P63000 192 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 FOXD4Q12950 439 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 LARS2Q15031 903 aaKnown RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 VWA1Q6PCB0 445 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 ARMC8Q8IUR7 673 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 OR6T1Q8NGN1 323 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 VANGL1Q8TAA9 524 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 ZPLD1Q8TCW7 415 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 RND1Q92730 232 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 ZNF775Q96BV0 537 aaPredicted RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 SPATA9Q9BWV2 254 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 EFCAB1Q9HAE3 211 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 ACER3Q9NUN7 267 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 THUMPD1Q9NXG2 353 aaKnown RBP12.09□□□□□ -0.47
LINC00540-202ENST00000616974 EGFL7Q9UHF1 273 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 SNX13Q9Y5W8 968 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 MYO9AB2RTY4 2548 aa12.09□□□□□ -0.47
LINC00540-202ENST00000616974 MBD3L4A6NDZ8 208 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 MBD3L3A6NE82 208 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 MBD3L5A6NJ08 208 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 NDUFAB1O14561 156 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 CEACAM8P31997 349 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 OR1E2P47887 323 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 TFF3Q07654 80 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 GLYR1Q49A26 553 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 LRRC23Q53EV4 343 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 PRAMEF8Q5VWM4 474 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 PRAMEF7Q5VXH5 474 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 GRAMD2AQ8IUY3 354 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 METTL25Q8N6Q8 603 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 CCDC197Q8NCU1 140 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 OR2T12Q8NG77 320 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 MBD3L2Q8NHZ7 208 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 ABHD3Q8WU67 409 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 C3orf49Q96BT1 292 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 CMTM5Q96DZ9 223 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 REXO5Q96IC2 774 aaKnown RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 MRGPRX4Q96LA9 322 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 KLHL15Q96M94 604 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 GID8Q9NWU2 228 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 PLEKHB1Q9UF11 243 aaPredicted RBP12.08□□□□□ -0.47
LINC00540-202ENST00000616974 ANGPT4Q9Y264 503 aa12.08□□□□□ -0.47
LINC00540-202ENST00000616974 PLCE1Q9P212 2302 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 ZNF469Q96JG9 3925 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-202ENST00000616974 ADAMDEC1O15204 470 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 GABRA1P14867 456 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 CPOXP36551 454 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 ART3Q13508 389 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 RINLQ6ZS11 566 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 VTCN1Q7Z7D3 282 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 CMIPQ8IY22 773 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 PM20D2Q8IYS1 436 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 PHF10Q8WUB8 498 aaKnown RBP12.08□□□□□ -0.48
LINC00540-202ENST00000616974 OSTF1Q92882 214 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 OR5B2Q96R09 309 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 NPDC1Q9NQX5 325 aaPredicted RBP12.08□□□□□ -0.48
LINC00540-202ENST00000616974 ABCD2Q9UBJ2 740 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 SEC14L4Q9UDX3 406 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 TAGLN3Q9UI15 199 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 AP4B1Q9Y6B7 739 aa12.08□□□□□ -0.48
LINC00540-202ENST00000616974 TMED7-TICAM2A0A0A6YYA0 188 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms