RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 RND1Q92730 232 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 NSL1Q96IY1 281 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 KLHL15Q96M94 604 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 UCN2Q96RP3 112 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 CTPS2Q9NRF8 586 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 CLCF1Q9UBD9 225 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 DOPEY2Q9Y3R5 2298 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 SPTBN1Q01082 2364 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 A0A0J9YW62 118 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 MBD3L4A6NDZ8 208 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 MBD3L3A6NE82 208 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 MBD3L5A6NJ08 208 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TOXO94900 526 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 CD247P20963 164 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TIMP3P35625 211 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 HTR3AP46098 478 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ZNF136P52737 540 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SMSP52788 366 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 RPS3AP61247 264 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 COPZ1P61923 177 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TMEM176BQ3YBM2 270 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 WBP2NLQ6ICG8 309 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 C3orf33Q6P1S2 294 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 CHMP1BQ7LBR1 199 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TRPM8Q7Z2W7 1104 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 MRGPRGQ86SM5 289 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ADGRG3Q86Y34 549 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ATP6V1C2Q8NEY4 427 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 MBD3L2Q8NHZ7 208 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC26A7Q8TE54 656 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ZNF845Q96IR2 970 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 WFDC6Q9BQY6 131 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ADAM19Q9H013 955 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SERINC1Q9NRX5 453 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 KLHL28Q9NXS3 571 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 CHRNA9Q9UGM1 479 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC13A4Q9UKG4 626 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 GJE1A6NN92 205 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SYT5O00445 386 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TNFSF11O14788 317 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 LGI1O95970 557 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 C8BP07358 591 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 T-ENOLP0DO92 83 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TACR3P29371 465 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 KDELR2P33947 212 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 EIF1AXP47813 144 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 POLR2HP52434 150 aaKnown RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 RIPPLY2Q5TAB7 128 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 XKRXQ6PP77 449 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 CADM2Q8N3J6 435 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ZNF808Q8N4W9 903 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 TNIP2Q8NFZ5 429 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 OR10Q1Q8NGQ4 319 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 OR10D3Q8NH80 312 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 OR2V1Q8NHB1 315 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC25A43Q8WUT9 341 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 RASSF5Q8WWW0 418 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 WNT2BQ93097 391 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 KCTD14Q9BQ13 255 aaPredicted RBP14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 EVA1AQ9H8M9 152 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 NDE1Q9NXR1 346 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 ADA2Q9NZK5 511 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 OSGIN1Q9UJX0 560 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 RNF6Q9Y252 685 aa14.87□□□□□ -0.03
CCDC28A-202ENST00000611852 COL12A1Q99715 3063 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 SPTAN1Q13813 2472 aaKnown RBP14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 DOCK7Q96N67 2140 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 TMED7-TICAM2A0A0A6YYA0 188 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 A0A0G2JNJ9 132 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 B2RBV5 119 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 TGM6O95932 706 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 AGAP20933 346 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 CALB2P22676 271 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 CEACAM8P31997 349 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 CPOXP36551 454 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 RGS8P57771 180 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 MXRA7P84157 204 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 SGCBQ16585 318 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 NRF1Q16656 503 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 SYT14P1Q58G82 188 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 HBMQ6B0K9 141 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 C6orf89Q6UWU4 347 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 C16orf89Q6UX73 402 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 CCDC121Q6ZUS5 278 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 LSMEM1Q8N8F7 131 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 C9orf106Q8NAJ2 232 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 SDCCAG3Q96C92 435 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 ARHGDIGQ99819 225 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 COQ10BQ9H8M1 238 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 PAQR5Q9NXK6 330 aaPredicted RBP14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 COQ3Q9NZJ6 369 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 Q9UFV3 132 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 TMED7Q9Y3B3 224 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 ZNF175Q9Y473 711 aa14.86□□□□□ -0.03
CCDC28A-202ENST00000611852 USP9YO00507 2555 aaPredicted RBP14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC22A20A6NK97 555 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 TMEM229AB2RXF0 380 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 CXCR6O00574 342 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 CXCL13O43927 109 aa14.85□□□□□ -0.03
CCDC28A-202ENST00000611852 TPST2O60704 377 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms