RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 LSMEM1Q8N8F7 131 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 OR52E4Q8NGH9 312 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 PROX1Q92786 737 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 FAM162AQ96A26 154 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 DMRTA2Q96SC8 542 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 TMEM185BQ9H7F4 350 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 CTPS2Q9NRF8 586 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 ADPRHL2Q9NX46 363 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 OSGIN1Q9UJX0 560 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 FAM215AQ9Y5M1 114 aa17.42■□□□□ 0.38
UPF1-209ENST00000600310 RP1L1Q8IWN7 2480 aaPredicted RBP17.41■□□□□ 0.38
UPF1-209ENST00000600310 GJE1A6NN92 205 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 H0YC42 278 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 ADAMDEC1O15204 470 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 SEC14L5O43304 696 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 TPST2O60704 377 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 GMNNO75496 209 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 HTR2AP28223 471 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 SHC1P29353 583 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 TPD52P55327 224 aaPredicted RBP17.41■□□□□ 0.38
UPF1-209ENST00000600310 CTU2Q2VPK5 515 aaKnown RBP17.41■□□□□ 0.38
UPF1-209ENST00000600310 ACSF3Q4G176 576 aaPredicted RBP17.41■□□□□ 0.38
UPF1-209ENST00000600310 DNAL1Q4LDG9 190 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 C3orf33Q6P1S2 294 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 ESPNLQ6ZVH7 1005 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 CBLL1Q75N03 491 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 LACC1Q8IV20 430 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 OR4D11Q8NGI4 311 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 OR6T1Q8NGN1 323 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 PHF10Q8WUB8 498 aaKnown RBP17.41■□□□□ 0.38
UPF1-209ENST00000600310 LZICQ8WZA0 190 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 ADGRG7Q96K78 797 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 KLHL15Q96M94 604 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 TUBA1CQ9BQE3 449 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 ZNF559Q9BR84 538 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 TRIM2Q9C040 744 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 GORASP2Q9H8Y8 452 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 CHRNA9Q9UGM1 479 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 MAGEL2Q9UJ55 1249 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 SLC9A8Q9Y2E8 581 aa17.41■□□□□ 0.38
UPF1-209ENST00000600310 TMED7-TICAM2A0A0A6YYA0 188 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 A0A0J9YW62 118 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 CD8B2A6NJW9 211 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 GYG2O15488 501 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 FMO6PO60774 539 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 SEMA7AO75326 666 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 ATP5HO75947 161 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 OPN1LWP04000 364 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 FKBP2P26885 142 aaKnown RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 MSX2P35548 267 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 MAP2K6P52564 334 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 RPS3AP61247 264 aaKnown RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 NCALDP61601 193 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 BNIP2Q12982 314 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 NPTX1Q15818 432 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 TMEM176BQ3YBM2 270 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 TMEM211Q6ICI0 200 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 POMZP3Q6PJE2 187 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 B3GNT6Q6ZMB0 384 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 ADGRE4PQ86SQ3 457 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 RANBP3LQ86VV4 465 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 RPRMLQ8N4K4 120 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 ATP6V1C2Q8NEY4 427 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 SLC25A43Q8WUT9 341 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 TPD52L3Q96J77 140 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 UCN2Q96RP3 112 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 MCHR1Q99705 422 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 BTBD10Q9BSF8 475 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 PRR14Q9BWN1 585 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 CALHM2Q9HA72 323 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 TMEM27Q9HBJ8 222 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 ERRFI1Q9UJM3 462 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 SH3GLB1Q9Y371 365 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 TMED7Q9Y3B3 224 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 SNX13Q9Y5W8 968 aa17.4■□□□□ 0.38
UPF1-209ENST00000600310 SPIN1Q9Y657 262 aaPredicted RBP17.4■□□□□ 0.38
UPF1-209ENST00000600310 A0A1B0GWA3 101 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CLEC18AA5D8T8 446 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CLCA1A8K7I4 914 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 EIF1AYO14602 144 aaKnown RBP17.39■□□□□ 0.37
UPF1-209ENST00000600310 SERPINA1P01009 418 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 SFTPDP35247 375 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 SRSF1Q07955 248 aaKnown RBP eCLIP17.39■□□□□ 0.374e-11■■□□□ 13.4
UPF1-209ENST00000600310 OR1Q1Q15612 314 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 NSUN5P2Q63ZY6 315 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 MTFR2Q6P444 385 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CLEC18BQ6UXF7 455 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 RPTNQ6XPR3 784 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CHMP1BQ7LBR1 199 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CARM1Q86X55 608 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 RBM45Q8IUH3 476 aaKnown RBP17.39■□□□□ 0.37
UPF1-209ENST00000600310 MARVELD2Q8N4S9 558 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 CLEC18CQ8NCF0 446 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 OR2V1Q8NHB1 315 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 VANGL1Q8TAA9 524 aaPredicted RBP17.39■□□□□ 0.37
UPF1-209ENST00000600310 C3orf49Q96BT1 292 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 TTYH2Q9BSA4 534 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 THTPAQ9BU02 230 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 PCDHAC1Q9H158 963 aa17.39■□□□□ 0.37
UPF1-209ENST00000600310 C12orf10Q9HB07 376 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms