RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 ME2P23368 584 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 PCGF2P35227 344 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 POU6F2P78424 691 aaPredicted RBP12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 MRPS22P82650 360 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 SYPL1Q16563 259 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 CYP51A1Q16850 503 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 EIPR1Q53HC9 387 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 PRAMEF8Q5VWM4 474 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 PRAMEF7Q5VXH5 474 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 LYPD8Q6UX82 237 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 IL17RELQ6ZVW7 336 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 IFNEQ86WN2 208 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 SLC30A8Q8IWU4 369 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 SLC15A4Q8N697 577 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 COX18Q8N8Q8 333 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 ANKFN1Q8N957 763 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 C11orf65Q8NCR3 313 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 MAL2Q969L2 176 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 TRNT1Q96Q11 434 aaKnown RBP12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 GAL3ST4Q96RP7 486 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 PIF1Q9H611 641 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 BCL2L10Q9HD36 194 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 P2RX2Q9UBL9 471 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 SVEP1Q4LDE5 3571 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 ROS1P08922 2347 aa12.48□□□□□ -0.41
SHKBP1-218ENST00000598907 DSPPQ9NZW4 1301 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 TSPAN2O60636 221 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ADAM11O75078 769 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 PDE5AO76074 875 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 PLAUP00749 431 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 NAGAP17050 411 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 IDUAP35475 653 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CDKN1AP38936 164 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 PCBP3P57721 371 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 RPS4XP62701 263 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CDK6Q00534 326 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 SRYQ05066 204 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 SCARB2Q14108 478 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 TRIM25Q14258 630 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 NNATQ16517 81 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CPEB4Q17RY0 729 aaKnown RBP eCLIP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 DCST2Q5T1A1 773 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ATAD3BQ5T9A4 648 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ANKRD34AQ69YU3 496 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 REEP3Q6NUK4 255 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 LRRC74BQ6ZQY2 392 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CCDC80Q76M96 950 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 FAM156AQ8NDB6 213 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 HIPK4Q8NE63 616 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 NFKBIDQ8NI38 313 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 PMM1Q92871 262 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ABTB1Q969K4 478 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 MCUR1Q96AQ8 359 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 TMEM19Q96HH6 336 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 TM9SF2Q99805 663 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 KCTD14Q9BQ13 255 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ANGPTL4Q9BY76 406 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 ZNF350Q9GZX5 532 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 SHARPINQ9H0F6 387 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 SLC38A1Q9H2H9 487 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 POLE3Q9NRF9 147 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 FBXO34Q9NWN3 711 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 SLC7A8Q9UHI5 535 aa12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CNOT11Q9UKZ1 510 aaKnown RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 CHCHD2Q9Y6H1 151 aaPredicted RBP12.47□□□□□ -0.41
SHKBP1-218ENST00000598907 A0A0G2JPF8 293 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 HNRNPCL2B2RXH8 293 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 HNRNPCL3B7ZW38 293 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 ACOT8O14734 319 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 FCMRO60667 390 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 RCBTB2O95199 551 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 PGM3O95394 542 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 H6PDO95479 791 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 IL33O95760 270 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 BCHEP06276 602 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 CHRM4P08173 479 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 HNRNPCL4P0DMR1 293 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 NR2F1P10589 423 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 GGT1P19440 569 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 ABCD3P28288 659 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 LCN1P31025 176 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 MSX2P35548 267 aaPredicted RBP12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 UGT2B10P36537 528 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 CD79BP40259 229 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 KCNJ5P48544 419 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 MASP1P48740 699 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 CRISP3P54108 245 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 PNLIPRP2P54317 469 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 MS4A2Q01362 244 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 TRAP1Q12931 704 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 BNIP2Q12982 314 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 GNA13Q14344 377 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 CCNJQ5T5M9 372 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 BICRALQ6AI39 1079 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 TYW3Q6IPR3 259 aaKnown RBP12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 FRRS1Q6ZNA5 592 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 C16orf62Q7Z3J2 963 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 TAGAPQ8N103 731 aa12.46□□□□□ -0.41
SHKBP1-218ENST00000598907 ARIH2OSQ8N7S6 290 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms