RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 GKAP1Q5VSY0 366 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 MYO7BQ6PIF6 2116 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 XKRXQ6PP77 449 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 KRT73Q86Y46 540 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 RBM45Q8IUH3 476 aaKnown RBP12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 ARMC8Q8IUR7 673 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 EID3Q8N140 333 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 CCDC197Q8NCU1 140 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 OR2V1Q8NHB1 315 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 LILRB4Q8NHJ6 448 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 FNDC9Q8TBE3 224 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 OSTF1Q92882 214 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 WNT2BQ93097 391 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 KLHL15Q96M94 604 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF607Q96SK3 696 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 HOPXQ9BPY8 73 aaPredicted RBP12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 OR11A1Q9GZK7 315 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 TAGLN3Q9UI15 199 aa12.75□□□□□ -0.37
SHKBP1-217ENST00000598558 TMEM72A0PK05 275 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ZC3H12DA2A288 527 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 NKX2-6A6NCS4 301 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 FAM220BPB1ANY3 271 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 RCBTB2O95199 551 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 LGI1O95970 557 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 AGAP20933 346 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC1A3P43003 542 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 EIF1AXP47813 144 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 GSK3BP49841 420 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC25A3Q00325 362 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ART3Q13508 389 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 PON3Q15166 354 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 NPTX1Q15818 432 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 HBMQ6B0K9 141 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF550Q7Z398 422 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 GRINAQ7Z429 371 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 TSPYL5Q86VY4 417 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ZNF440Q8IYI8 595 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 MICU2Q8IYU8 434 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 RELL2Q8NC24 303 aaPredicted RBP12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 TMEM234Q8WY98 164 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ROBO4Q8WZ75 1007 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ARL5BQ96KC2 179 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 TMEM181Q9P2C4 612 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 ABCD2Q9UBJ2 740 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 DOPEY1Q5JWR5 2465 aa12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 UTP20O75691 2785 aaKnown RBP12.74□□□□□ -0.37
SHKBP1-217ENST00000598558 USP9YO00507 2555 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 TMED7-TICAM2A0A0A6YYA0 188 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 M0R3H8 397 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 CLDN14O95500 239 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 TNFRSF1BP20333 461 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 CHRNB4P30926 498 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 APOBEC1P41238 236 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 CARD18P57730 90 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 TFF3Q07654 80 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 BNIP2Q12982 314 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 SELENBP1Q13228 472 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 VEZF1Q14119 521 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 KRT72Q14CN4 511 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 NRF1Q16656 503 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 ZSWIM7Q19AV6 140 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 ESPNLQ6ZVH7 1005 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 PATL1Q86TB9 770 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 GCNT2Q8N0V5 402 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 CADM2Q8N3J6 435 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 OR2T12Q8NG77 320 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 BCAS4Q8TDM0 211 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 C3orf49Q96BT1 292 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 INTS12Q96CB8 462 aaKnown RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 ARHGDIGQ99819 225 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 SPATA5L1Q9BVQ7 753 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 PLEKHB1Q9UF11 243 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 CHRNA9Q9UGM1 479 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 TMED7Q9Y3B3 224 aa12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 NCOA6Q14686 2063 aaPredicted RBP12.73□□□□□ -0.37
SHKBP1-217ENST00000598558 IGHV3-15A0A0B4J1V0 119 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 ELOVL7A1L3X0 281 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 PRORSD1PA6NEY8 169 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC22A20A6NK97 555 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 FAM90A27PA6NNH2 459 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 HSPB2A8KAH6 182 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 SERPINB7O75635 380 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 IL2RAP01589 272 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 IMPDH2P12268 514 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 ENPP1P22413 925 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 ME2P23368 584 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 KDELR2P33947 212 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 CPOXP36551 454 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 POLR2HP52434 150 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 EEFSECP57772 596 aaKnown RBP12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 SF3B4Q15427 424 aaKnown RBP eCLIP12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 GUSBP1Q15486 140 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 HSPB2Q16082 182 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 SGCBQ16585 318 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 WBP2NLQ6ICG8 309 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 MAMDC2Q7Z304 686 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 ARPINQ7Z6K5 226 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 ATG4DQ86TL0 474 aaPredicted RBP12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 SLC30A8Q8IWU4 369 aa12.72□□□□□ -0.37
SHKBP1-217ENST00000598558 RNF148Q8N7C7 305 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms