RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 C1GALT1C1Q96EU7 318 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 SIGLEC12Q96PQ1 595 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 FEVQ99581 238 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 BARD1Q99728 777 aaKnown RBP14.05□□□□□ -0.16
UPF1-206ENST00000598471 PRSS27Q9BQR3 290 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 SLC19A3Q9BZV2 496 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 SMURF2Q9HAU4 748 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 PROK2Q9HC23 129 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 KRT84Q9NSB2 600 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 MED17Q9NVC6 651 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 SMPD3Q9NY59 655 aaPredicted RBP14.05□□□□□ -0.16
UPF1-206ENST00000598471 B4GALT7Q9UBV7 327 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 DKKL1Q9UK85 242 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 POFUT2Q9Y2G5 429 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 PCDHGA9Q9Y5G4 932 aaKnown RBP14.05□□□□□ -0.16
UPF1-206ENST00000598471 DOCK10Q96BY6 2186 aa14.05□□□□□ -0.16
UPF1-206ENST00000598471 TPRP12270 2363 aaKnown RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 A0A087WUJ7 227 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 TNFSF12-TNFSF13A0A0A6YY99 330 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 HTR3EA5X5Y0 456 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 NME2P1O60361 137 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 SP1P08047 785 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 NME2P22392 152 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 CBLP22681 906 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 EIF1P41567 113 aaKnown RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 AQP4P55087 323 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 DLX5P56178 289 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 DSCR4P56555 118 aaPredicted RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 IL1RL1Q01638 556 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 MERTKQ12866 999 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 TOMM34Q15785 309 aaPredicted RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 KDM4DQ6B0I6 523 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 ZNF770Q6IQ21 691 aaPredicted RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 PGBD2Q6P3X8 592 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 BORAQ6PGQ7 559 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 NRMQ8IXM6 262 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 GNPDA2Q8TDQ7 276 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 ZBTB8AQ96BR9 441 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 MRGPRX4Q96LA9 322 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 SMAD5Q99717 465 aaKnown RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 TMEM43Q9BTV4 400 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 DGCR6LQ9BY27 220 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 ADAM19Q9H013 955 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 PAPOLBQ9NRJ5 636 aaKnown RBP14.04□□□□□ -0.16
UPF1-206ENST00000598471 VDAC3Q9Y277 283 aa14.04□□□□□ -0.16
UPF1-206ENST00000598471 A0A087WV48 116 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 MKRN2OSH3BPM6 223 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 KLRC4-KLRK1H3BQV0 150 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 PRKCAP17252 672 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 GSTM3P21266 225 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 FUT4P22083 530 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 MST1P26927 711 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 DPP4P27487 766 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 APOBEC1P41238 236 aaKnown RBP14.03□□□□□ -0.16
UPF1-206ENST00000598471 DAPP51397 102 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 GPR85P60893 370 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 PLPPR5Q32ZL2 321 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 SLC25A53Q5H9E4 307 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 C1orf94Q6P1W5 598 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 C19orf48Q6RUI8 117 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 LINC00114Q6XXX2 140 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 WDR88Q6ZMY6 472 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 OR2M7Q8NG81 312 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 GTPBP3Q969Y2 492 aaKnown RBP14.03□□□□□ -0.16
UPF1-206ENST00000598471 ZNF426Q9BUY5 554 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 Q9H521 79 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 ZFP64Q9NPA5 681 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 SERINC1Q9NRX5 453 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 OSGIN1Q9UJX0 560 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 FBXL2Q9UKC9 423 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 C15orf41Q9Y2V0 281 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 PCDHGB7Q9Y5F8 929 aa14.03□□□□□ -0.16
UPF1-206ENST00000598471 SPIN1Q9Y657 262 aaPredicted RBP14.03□□□□□ -0.16
UPF1-206ENST00000598471 APC2O95996 2303 aa14.02□□□□□ -0.16
UPF1-206ENST00000598471 TMED7-TICAM2A0A0A6YYA0 188 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 TRAV17A0A0B4J275 112 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 A0A0G2JMM0 328 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 A0A1W2PPB8 328 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 A0A1W2PRS3 328 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 KIR3DP1A8MWS1 328 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 ETV2O00321 342 aaPredicted RBP14.02□□□□□ -0.17
UPF1-206ENST00000598471 KPNA4O00629 521 aaPredicted RBP14.02□□□□□ -0.17
UPF1-206ENST00000598471 GASTP01350 101 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 IFI30P13284 250 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 HK1P19367 917 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 ADH6P28332 368 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 SRD5A2P31213 254 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 TNFSF10P50591 281 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 MAP2K6P52564 334 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 ALDH6A1Q02252 535 aaKnown RBP14.02□□□□□ -0.17
UPF1-206ENST00000598471 PRKCDQ05655 676 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 COX10Q12887 443 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 FOXF1Q12946 379 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 KCNAB2Q13303 367 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 INPP5JQ15735 1006 aaPredicted RBP14.02□□□□□ -0.17
UPF1-206ENST00000598471 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.02□□□□□ -0.17
UPF1-206ENST00000598471 ZNF766Q5HY98 468 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 WLSQ5T9L3 541 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 POMZP3Q6PJE2 187 aa14.02□□□□□ -0.17
UPF1-206ENST00000598471 C5orf46Q6UWT4 87 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms