RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 VPS33AQ96AX1 596 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 DNAJA3Q96EY1 480 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 AURKBQ96GD4 344 aaPredicted RBP11.6□□□□□ -0.55
LIG1-212ENST00000596549 ARL5BQ96KC2 179 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TRNT1Q96Q11 434 aaKnown RBP11.6□□□□□ -0.55
LIG1-212ENST00000596549 ZBTB18Q99592 522 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 GP6Q9HCN6 339 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 SLCO1B3Q9NPD5 702 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 TIGARQ9NQ88 270 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 ZIM2Q9NZV7 527 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 USH1CQ9Y6N9 552 aa11.6□□□□□ -0.55
LIG1-212ENST00000596549 AGAP5A6NIR3 686 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 CYTIPO60759 359 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 SLC22A3O75751 556 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 PRKD3O94806 890 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 IL6P05231 212 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 PABPC4LP0CB38 370 aaKnown RBP11.59□□□□□ -0.55
LIG1-212ENST00000596549 ETFAP13804 333 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 CD99P14209 185 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 HOXC12P31275 282 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 RYKP34925 604 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 RIPPLY3P57055 190 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 KCNJ10P78508 379 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 LRRC74AQ0VAA2 488 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 GSTA3Q16772 222 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 MRPL2Q5T653 305 aaKnown RBP11.59□□□□□ -0.55
LIG1-212ENST00000596549 GTF2IRD2BQ6EKJ0 949 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 SEZ6L2Q6UXD5 910 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.59□□□□□ -0.55
LIG1-212ENST00000596549 GRINAQ7Z429 371 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 GTF2IRD2Q86UP8 949 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 SLC43A2Q8N370 569 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 ZNF563Q8TA94 476 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 SLC25A43Q8WUT9 341 aaPredicted RBP11.59□□□□□ -0.55
LIG1-212ENST00000596549 WDR60Q8WVS4 1066 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 S100PBPQ96BU1 408 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 REXO5Q96IC2 774 aaKnown RBP11.59□□□□□ -0.55
LIG1-212ENST00000596549 C7orf26Q96N11 449 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 OR11A1Q9GZK7 315 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 OR10A4Q9H209 315 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 UBTD1Q9HAC8 227 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 KLHL9Q9P2J3 617 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 CHRNA9Q9UGM1 479 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 PRSS50Q9UI38 385 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 EDARQ9UNE0 448 aa11.59□□□□□ -0.55
LIG1-212ENST00000596549 ZNF814B7Z6K7 855 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 DIAPH2O60879 1101 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 PLAUP00749 431 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 BCHEP06276 602 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 YES1P07947 543 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 ZCCHC18P0CG32 403 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 PPP3CBP16298 524 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 TXNL4AP83876 142 aaKnown RBP11.58□□□□□ -0.56
LIG1-212ENST00000596549 BEX5Q5H9J7 111 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 RPS26P11Q5JNZ5 115 aaPredicted RBP11.58□□□□□ -0.56
LIG1-212ENST00000596549 EPGNQ6UW88 154 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 ZNF836Q6ZNA1 936 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 TMPPEQ6ZT21 453 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 MSANTD1Q6ZTZ1 278 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 STK32CQ86UX6 486 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 WFDC8Q8IUA0 241 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 CMIPQ8IY22 773 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 ARFGAP2Q8N6H7 521 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 IGFBPL1Q8WX77 278 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 EBF4Q9BQW3 602 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.58□□□□□ -0.56
LIG1-212ENST00000596549 BEX4Q9NWD9 120 aaPredicted RBP11.58□□□□□ -0.56
LIG1-212ENST00000596549 P2RX2Q9UBL9 471 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 LIPT1Q9Y234 373 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 GPR52Q9Y2T5 361 aa11.58□□□□□ -0.56
LIG1-212ENST00000596549 FLNAP21333 2647 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 ZNF716A6NP11 495 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 UBDO15205 165 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 RAMP1O60894 148 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 APOBEC1P41238 236 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 OR3A2P47893 321 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 IDH2P48735 452 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 MRPL19P49406 292 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 ANXA11P50995 505 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 POLR2JP52435 117 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 PPP2R2AP63151 447 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 RASGEF1BQ0VAM2 473 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 ACKR1Q16570 336 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 SFRP5Q5T4F7 317 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 SLC2A7Q6PXP3 512 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 ATG4DQ86TL0 474 aaPredicted RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 VRK2Q86Y07 508 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 ADGRG3Q86Y34 549 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 GTF2H4Q92759 462 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 PLPPR2Q96GM1 343 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 ATP6V1G3Q96LB4 118 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 TACO1Q9BSH4 297 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 TMEM204Q9BSN7 226 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 PAIP1Q9H074 479 aaKnown RBP11.57□□□□□ -0.56
LIG1-212ENST00000596549 TPT1P8Q9HAU6 139 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 SERINC1Q9NRX5 453 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 CHST2Q9Y4C5 530 aa11.57□□□□□ -0.56
LIG1-212ENST00000596549 IGKV3D-15A0A087WSY6 115 aa11.56□□□□□ -0.56
LIG1-212ENST00000596549 TMEM72A0PK05 275 aa11.56□□□□□ -0.56
LIG1-212ENST00000596549 ZC3H12DA2A288 527 aaKnown RBP11.56□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms