RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SLC13A4Q9UKG4 626 aa23.17■■□□□ 1.3
TRIM28-204ENST00000594806 CACNA1CQ13936 2221 aa23.17■■□□□ 1.3
TRIM28-204ENST00000594806 PTPN13Q12923 2485 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 SLC22A20A6NK97 555 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 FAM220BPB1ANY3 271 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 H0YC42 278 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 M0QX08 132 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 MFN2O95140 757 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 FCGR2AP12318 317 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 AQP1P29972 269 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 CLK1P49759 484 aaKnown RBP23.16■■□□□ 1.3
TRIM28-204ENST00000594806 TPD52P55327 224 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-204ENST00000594806 WBP2NLQ6ICG8 309 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 C8orf82Q6P1X6 216 aaPredicted RBP23.16■■□□□ 1.3
TRIM28-204ENST00000594806 P4HA3Q7Z4N8 544 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 SLC15A3Q8IY34 581 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 TNIP2Q8NFZ5 429 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 OR10D3Q8NH80 312 aa23.16■■□□□ 1.3
TRIM28-204ENST00000594806 MCTS1Q9ULC4 181 aaKnown RBP23.16■■□□□ 1.3
TRIM28-204ENST00000594806 INTS1Q8N201 2190 aaKnown RBP23.16■■□□□ 1.3
TRIM28-204ENST00000594806 A0A0J9YW62 118 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 AP3D1O14617 1153 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 IL18BPO95998 194 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 CRHP06850 196 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 C8BP07358 591 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 GKN3PP0CG01 181 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 IL11P20809 199 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 EIF1AXP47813 144 aaKnown RBP23.15■■□□□ 1.3
TRIM28-204ENST00000594806 POLR2HP52434 150 aaKnown RBP23.15■■□□□ 1.3
TRIM28-204ENST00000594806 SLC25A35Q3KQZ1 300 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 TMEM176BQ3YBM2 270 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-204ENST00000594806 HBMQ6B0K9 141 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 CCDC71Q8IV32 467 aaPredicted RBP23.15■■□□□ 1.3
TRIM28-204ENST00000594806 C9orf106Q8NAJ2 232 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 OR2T12Q8NG77 320 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 ADAM19Q9H013 955 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 TMEM185BQ9H7F4 350 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 CHRNA9Q9UGM1 479 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 TAGLN3Q9UI15 199 aa23.15■■□□□ 1.3
TRIM28-204ENST00000594806 KIAA1549Q9HCM3 1950 aa23.14■■□□□ 1.3
TRIM28-204ENST00000594806 KDM4EB2RXH2 506 aaPredicted RBP23.14■■□□□ 1.29
TRIM28-204ENST00000594806 SYT5O00445 386 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 DVL2O14641 736 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CLDN1O95832 211 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 IFNA14P01570 189 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CTSSP25774 331 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 SLC7A1P30825 629 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 SFTPDP35247 375 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 OPRM1P35372 400 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CARD18P57730 90 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CPNE4Q96A23 557 aaPredicted RBP23.14■■□□□ 1.29
TRIM28-204ENST00000594806 PIF1Q9H611 641 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CTPS2Q9NRF8 586 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 CMTM6Q9NX76 183 aa23.14■■□□□ 1.29
TRIM28-204ENST00000594806 PLEKHB1Q9UF11 243 aaPredicted RBP23.14■■□□□ 1.29
TRIM28-204ENST00000594806 TNFSF11O14788 317 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 GCM2O75603 506 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-204ENST00000594806 SYNGR4O95473 234 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 TMIGD3P0DMS9 266 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-204ENST00000594806 MNAT1P51948 309 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 DMTNQ08495 405 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 KRT72Q14CN4 511 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 PON3Q15166 354 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 ADGRG3Q86Y34 549 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 SLC26A7Q8TE54 656 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 OSTF1Q92882 214 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 ZNF845Q96IR2 970 aaPredicted RBP23.13■■□□□ 1.29
TRIM28-204ENST00000594806 CHST11Q9NPF2 352 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 KCNJ16Q9NPI9 418 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 OSGIN1Q9UJX0 560 aa23.13■■□□□ 1.29
TRIM28-204ENST00000594806 ELOVL7A1L3X0 281 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 ZNF208O43345 1280 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 TPST1O60507 370 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 TGM6O95932 706 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 OPN1LWP04000 364 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 TACR3P29371 465 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 ZNF136P52737 540 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 SYT14P1Q58G82 188 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 GTF2IRD2BQ6EKJ0 949 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 GTF2IRD2Q86UP8 949 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 MICU2Q8IYU8 434 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 NAXEQ8NCW5 288 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 ATP6V1C2Q8NEY4 427 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 SFXN3Q9BWM7 321 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 PRRG4Q9BZD6 226 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 RNF122Q9H9V4 155 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 NDE1Q9NXR1 346 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 ABCD2Q9UBJ2 740 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 HDGFL3Q9Y3E1 203 aa23.12■■□□□ 1.29
TRIM28-204ENST00000594806 TMED7-TICAM2A0A0A6YYA0 188 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 A1L4Q6 167 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 CCT8L1PA6NM43 557 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 CXCL13O43927 109 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 LGI1O95970 557 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 HTR1EP28566 365 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 SHC1P29353 583 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 KCNJ5P48544 419 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 SLC7A2P52569 658 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 RAC3P60763 192 aa23.11■■□□□ 1.29
TRIM28-204ENST00000594806 PSME3P61289 254 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms