RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 IGHV3-15A0A0B4J1V0 119 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 TMEM247A6NEH6 219 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 SULT2B1O00204 365 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 RAF1P04049 648 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 DBIP07108 87 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 YES1P07947 543 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 ETFAP13804 333 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 UQCRBP14927 111 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 PPP3CBP16298 524 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 RPS4Y1P22090 263 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CRYGSP22914 178 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 FKBP2P26885 142 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 HTR3AP46098 478 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 IDH2P48735 452 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 MRPL19P49406 292 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 MVDP53602 400 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 AQP5P55064 265 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 PPP2R2AP63151 447 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CSNK2A1P68400 391 aaPredicted RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 ANKRD34AQ69YU3 496 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 TUSC5Q8IXB3 177 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 PEX5LQ8IYB4 626 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 WDR60Q8WVS4 1066 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CNOT9Q92600 299 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 ZC3HAV1LQ96H79 300 aaKnown RBP13.61□□□□□ -0.23
TRIM28-203ENST00000593582 EBF4Q9BQW3 602 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CCDC28BQ9BUN5 200 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CCDC106Q9BWC9 280 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CTPS2Q9NRF8 586 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 CHRNA9Q9UGM1 479 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 HIVEP1P15822 2718 aa13.61□□□□□ -0.23
TRIM28-203ENST00000593582 DEFB108AA8MXU0 73 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 TFPIP10646 304 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 H2AFXP16104 143 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-203ENST00000593582 DIO1P49895 249 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 CRISP3P54108 245 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 DSTNP60981 165 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 PLAURQ03405 335 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 AKAP6Q13023 2319 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 GTDC1Q4AE62 458 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 MRPL2Q5T653 305 aaKnown RBP13.6□□□□□ -0.23
TRIM28-203ENST00000593582 STAC2Q6ZMT1 411 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 TMPPEQ6ZT21 453 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 SLC38A5Q8WUX1 472 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 GTF2H4Q92759 462 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 AURKBQ96GD4 344 aaPredicted RBP13.6□□□□□ -0.23
TRIM28-203ENST00000593582 RAD21L1Q9H4I0 556 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 CACYBPQ9HB71 228 aaKnown RBP13.6□□□□□ -0.23
TRIM28-203ENST00000593582 PCDHB14Q9Y5E9 798 aa13.6□□□□□ -0.23
TRIM28-203ENST00000593582 MAP1AP78559 2803 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 F8P00451 2351 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 VPS13CQ709C8 3753 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 TEP1Q99973 2627 aaKnown RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 CFAP73A6NFT4 308 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 CYTIPO60759 359 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 BCHEP06276 602 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 TFPTP0C1Z6 253 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 CLK1P49759 484 aaKnown RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 IRX1P78414 480 aaPredicted RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 RASGEF1BQ0VAM2 473 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 LIN52Q52LA3 116 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 SLC2A7Q6PXP3 512 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 TFAP2EQ6VUC0 442 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 NUFIP2Q7Z417 695 aaKnown RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 ZNF440Q8IYI8 595 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 MBD6Q96DN6 1003 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 ZHX1-C8orf76Q96EF9 292 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 PIK3IP1Q96FE7 263 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 MAGEB18Q96M61 343 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 ALPK1Q96QP1 1244 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 PSD2Q9BQI7 771 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 HDHD5Q9BXW7 423 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 ACTR6Q9GZN1 396 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 PAIP1Q9H074 479 aaKnown RBP13.59□□□□□ -0.23
TRIM28-203ENST00000593582 CXXC4Q9H2H0 198 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 BCO1Q9HAY6 547 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 CCDC167Q9P0B6 97 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 GPR52Q9Y2T5 361 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 HDGFL3Q9Y3E1 203 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 ABCA4P78363 2273 aa13.59□□□□□ -0.23
TRIM28-203ENST00000593582 HEATR5AQ86XA9 2040 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 A0A096LPI6 279 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 A0A1W2PPR1 153 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 CLIC1O00299 241 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 FAAHO00519 579 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 AP3D1O14617 1153 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 SMAD9O15198 467 aaKnown RBP13.58□□□□□ -0.24
TRIM28-203ENST00000593582 SIAH2O43255 324 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 ADAM11O75078 769 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 ATE1O95260 518 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 FESP07332 822 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 PSMB1P20618 241 aaKnown RBP13.58□□□□□ -0.24
TRIM28-203ENST00000593582 SLC1A3P43003 542 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 POLR2HP52434 150 aaKnown RBP13.58□□□□□ -0.24
TRIM28-203ENST00000593582 FADDQ13158 208 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 LARS2Q15031 903 aaKnown RBP13.58□□□□□ -0.24
TRIM28-203ENST00000593582 MAPK11Q15759 364 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 ZSWIM7Q19AV6 140 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 BLOC1S3Q6QNY0 202 aa13.58□□□□□ -0.24
TRIM28-203ENST00000593582 MTDHQ86UE4 582 aaKnown RBP13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms