RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 FAM46AQ96IP4 442 aaKnown RBP22.79■■□□□ 1.24
SHMT1-207ENST00000580002 MBOAT4Q96T53 435 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 ANKRD19PQ9H560 264 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 TUBA8Q9NY65 449 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-207ENST00000580002 PRDM4Q9UKN5 801 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 MED12Q93074 2177 aa22.79■■□□□ 1.24
SHMT1-207ENST00000580002 ANKRD11Q6UB99 2663 aaPredicted RBP22.79■■□□□ 1.24
SHMT1-207ENST00000580002 A0A087WUJ7 227 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 OR5H15A6NDH6 313 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 CEACAM4O75871 244 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 THRBP10828 461 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 IL11P20809 199 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 HOXD11P31277 338 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-207ENST00000580002 CASRP41180 1078 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 OMPP47874 163 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 OR4K17Q8NGC6 315 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 POC1BQ8TC44 478 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 KIF17Q9P2E2 1029 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 LRRC3CA6NJW4 275 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 EFNA2O43921 213 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 GP1BBP13224 206 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 PRKCAP17252 672 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 CNR1P21554 472 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 IGFBP5P24593 272 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 GPR4P46093 362 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 MASP1P48740 699 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 NHSL2Q5HYW2 709 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 TIGD3Q6B0B8 471 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 Q6ZPB1 254 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-207ENST00000580002 MBOAT2Q6ZWT7 520 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 OR1J4Q8NGS1 313 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 DNAJA4Q8WW22 397 aaPredicted RBP22.78■■□□□ 1.24
SHMT1-207ENST00000580002 DNAJC9Q8WXX5 260 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 ZNF426Q9BUY5 554 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 TOR3AQ9H497 397 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 TIMMDC1Q9NPL8 285 aa22.78■■□□□ 1.24
SHMT1-207ENST00000580002 LRRN3E7EW58 273 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 MAKP20794 623 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 ARG2P78540 354 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 FOXF1Q12946 379 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 KLHL17Q6TDP4 642 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 ADGRG3Q86Y34 549 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 SULF2Q8IWU5 870 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 HAS2Q92819 552 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 PSD2Q9BQI7 771 aa22.77■■□□□ 1.24
SHMT1-207ENST00000580002 SMPD3Q9NY59 655 aaPredicted RBP22.77■■□□□ 1.24
SHMT1-207ENST00000580002 K7EM74 188 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 RRP8O43159 456 aaKnown RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 CLIC3O95833 236 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 MSX1P28360 303 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 EGR4Q05215 589 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 FOXO1Q12778 655 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 MERTKQ12866 999 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 PLPPR5Q32ZL2 321 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 C1QL3Q5VWW1 255 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 C1orf94Q6P1W5 598 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 C1GALT1C1Q96EU7 318 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 TMEM41AQ96HV5 264 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 UBL7Q96S82 380 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 KRT84Q9NSB2 600 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 LRRC42Q9Y546 428 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 ZC3H12DA2A288 527 aaKnown RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 ELOA3DA6NLF2 546 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 K7ENP7 123 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 CDC42EP2O14613 210 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 SNX4O95219 450 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 HPRP00739 348 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 SP1P08047 785 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 ANXA8P13928 327 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 UQCRBP14927 111 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 ELOA3BQ3SY89 546 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 INO80CQ6PI98 192 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 RRM2BQ7LG56 351 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 GALNTL5Q7Z4T8 443 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 ELOA3Q8NG57 546 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 VCXQ9H320 206 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 SELENONQ9NZV5 590 aa22.76■■□□□ 1.23
SHMT1-207ENST00000580002 RPH3AQ9Y2J0 694 aaPredicted RBP22.76■■□□□ 1.23
SHMT1-207ENST00000580002 TNRC6AQ8NDV7 1962 aaKnown RBP22.75■■□□□ 1.23
SHMT1-207ENST00000580002 TNFSF12-TNFSF13A0A0A6YY99 330 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 TMEM72A0PK05 275 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 OPN1LWP04000 364 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 PDGFAP04085 211 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 TP53P04637 393 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-207ENST00000580002 IFI30P13284 250 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 SUMO3P55854 103 aaPredicted RBP22.75■■□□□ 1.23
SHMT1-207ENST00000580002 IGFL2Q6UWQ7 119 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 OR2M7Q8NG81 312 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 MPP4Q96JB8 637 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 RIBC2Q9H4K1 309 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 REV1Q9UBZ9 1251 aa22.75■■□□□ 1.23
SHMT1-207ENST00000580002 TMED7-TICAM2A0A0A6YYA0 188 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 ARRDC5A6NEK1 342 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 SOX14O95416 240 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 CRYZQ08257 329 aaKnown RBP22.74■■□□□ 1.23
SHMT1-207ENST00000580002 GK3PQ14409 553 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 SLC25A25Q6KCM7 469 aa22.74■■□□□ 1.23
SHMT1-207ENST00000580002 TTC33Q6PID6 262 aaPredicted RBP22.74■■□□□ 1.23
SHMT1-207ENST00000580002 PIGXQ8TBF5 258 aa22.74■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms