RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 FUNDC1Q8IVP5 155 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 TUSC5Q8IXB3 177 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 PEX5LQ8IYB4 626 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 SLC38A5Q8WUX1 472 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 WDR60Q8WVS4 1066 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 MAGEB18Q96M61 343 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 OR5B2Q96R09 309 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 KLHL4Q9C0H6 718 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 PAIP1Q9H074 479 aaKnown RBP18.09■□□□□ 0.49
CLK3-225ENST00000569063 FANCFQ9NPI8 374 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 TMEM45AQ9NWC5 275 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 PCDHB14Q9Y5E9 798 aa18.09■□□□□ 0.49
CLK3-225ENST00000569063 FAAHO00519 579 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 YES1P07947 543 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 HOXB9P17482 250 aaPredicted RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 CRYGSP22914 178 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 IDH2P48735 452 aaKnown RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 ART1P52961 327 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 CRISP3P54108 245 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 DSTNP60981 165 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 SYT14P1Q58G82 188 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 SLC2A7Q6PXP3 512 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 BLOC1S3Q6QNY0 202 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 STAC2Q6ZMT1 411 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 TMPPEQ6ZT21 453 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 STON2Q8WXE9 905 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 AURKBQ96GD4 344 aaPredicted RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 FOXC2Q99958 501 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 TACO1Q9BSH4 297 aaKnown RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 C12orf49Q9H741 205 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 BCO1Q9HAY6 547 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 CTPS2Q9NRF8 586 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 CCM2LQ9NUG4 571 aaPredicted RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 CHRNA9Q9UGM1 479 aa18.08■□□□□ 0.48
CLK3-225ENST00000569063 SPIN1Q9Y657 262 aaPredicted RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 HRNRQ86YZ3 2850 aaPredicted RBP18.08■□□□□ 0.48
CLK3-225ENST00000569063 A0A096LPI6 279 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 DEFB108AA8MXU0 73 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 CYTIPO60759 359 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 CD1EP15812 388 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 PPP3CBP16298 524 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 DNASE1P24855 282 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 HTR3AP46098 478 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 DIO1P49895 249 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 ATP4BP51164 291 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 CSNK2A1P68400 391 aaPredicted RBP18.07■□□□□ 0.48
CLK3-225ENST00000569063 POU4F3Q15319 338 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 RGNQ15493 299 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 MRPL2Q5T653 305 aaKnown RBP18.07■□□□□ 0.48
CLK3-225ENST00000569063 PAMR1Q6UXH9 720 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 C22orf34Q6ZV56 151 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 ZNF550Q7Z398 422 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 ADGRG3Q86Y34 549 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 PSD2Q9BQI7 771 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 OR10A4Q9H209 315 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 CXXC4Q9H2H0 198 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 SLC52A3Q9NQ40 469 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 KLHL9Q9P2J3 617 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 ING1Q9UK53 422 aaPredicted RBP18.07■□□□□ 0.48
CLK3-225ENST00000569063 PRDM4Q9UKN5 801 aa18.07■□□□□ 0.48
CLK3-225ENST00000569063 CELSR1Q9NYQ6 3014 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 IGHV3-15A0A0B4J1V0 119 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 A0A1W2PPR1 153 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 CDHR4A6H8M9 788 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 SULT2B1O00204 365 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 CLIC1O00299 241 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 AP3D1O14617 1153 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 SMAD9O15198 467 aaKnown RBP18.06■□□□□ 0.48
CLK3-225ENST00000569063 SIAH2O43255 324 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 SASH3O75995 380 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 BCHEP06276 602 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 CLK1P49759 484 aaKnown RBP18.06■□□□□ 0.48
CLK3-225ENST00000569063 FADDQ13158 208 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 LRIF1Q5T3J3 769 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 TFAP2EQ6VUC0 442 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 NUFIP2Q7Z417 695 aaKnown RBP18.06■□□□□ 0.48
CLK3-225ENST00000569063 ZNF440Q8IYI8 595 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 OR52P1PQ8NH57 321 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 MBD6Q96DN6 1003 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 SPDL1Q96EA4 605 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 RAD21L1Q9H4I0 556 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 CCDC167Q9P0B6 97 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 C6orf203Q9P0P8 240 aaPredicted RBP18.06■□□□□ 0.48
CLK3-225ENST00000569063 PLEKHA6Q9Y2H5 1048 aa18.06■□□□□ 0.48
CLK3-225ENST00000569063 A0A0G2JPF8 293 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 TMEM247A6NEH6 219 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 CFAP73A6NFT4 308 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 HNRNPCL2B2RXH8 293 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 HNRNPCL3B7ZW38 293 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 HNRNPCL1O60812 293 aaKnown RBP18.05■□□□□ 0.48
CLK3-225ENST00000569063 PMS2P2O95744 297 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 RAF1P04049 648 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 HNRNPCL4P0DMR1 293 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 BMP2P12643 396 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 PSMB1P20618 241 aaKnown RBP18.05■□□□□ 0.48
CLK3-225ENST00000569063 SLC1A3P43003 542 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 MAP2K6P52564 334 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 RASGEF1BQ0VAM2 473 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 EPS8Q12929 822 aa18.05■□□□□ 0.48
CLK3-225ENST00000569063 LIN52Q52LA3 116 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms