RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 M0R3H8 397 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 TNFSF11O14788 317 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 TGM6O95932 706 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 NCK1P16333 377 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ELK4P28324 431 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 EEFSECP57772 596 aaKnown RBP17.57■□□□□ 0.4
CLN3-225ENST00000566824 NPTX1Q15818 432 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 TMEM176BQ3YBM2 270 aaPredicted RBP17.57■□□□□ 0.4
CLN3-225ENST00000566824 NSUN5P2Q63ZY6 315 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ERICH5Q6P6B1 374 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 RBM45Q8IUH3 476 aaKnown RBP17.57■□□□□ 0.4
CLN3-225ENST00000566824 CADM2Q8N3J6 435 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 MEIOBQ8N635 442 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 FAM156AQ8NDB6 213 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 TMEM234Q8WY98 164 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 FIG4Q92562 907 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ARHGDIGQ99819 225 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ADAM19Q9H013 955 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ALG2Q9H553 416 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 ADA2Q9NZK5 511 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 OSGIN1Q9UJX0 560 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 RNF6Q9Y252 685 aa17.57■□□□□ 0.4
CLN3-225ENST00000566824 A0A0G2JNJ9 132 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 A0A1W2PNR3 127 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 B2RBV5 119 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 CXCL13O43927 109 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 HOXD4P09016 255 aaPredicted RBP17.56■□□□□ 0.4
CLN3-225ENST00000566824 TNFRSF1BP20333 461 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 TACR3P29371 465 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 KDELR2P33947 212 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 SLC1A3P43003 542 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 ZSWIM7Q19AV6 140 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 INTS11Q5TA45 600 aaKnown RBP17.56■□□□□ 0.4
CLN3-225ENST00000566824 TRPM8Q7Z2W7 1104 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 ZNF550Q7Z398 422 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 GRINAQ7Z429 371 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 TSPYL5Q86VY4 417 aaPredicted RBP17.56■□□□□ 0.4
CLN3-225ENST00000566824 PGAM4Q8N0Y7 254 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 RBM15BQ8NDT2 890 aaKnown RBP17.56■□□□□ 0.4
CLN3-225ENST00000566824 OR10D3Q8NH80 312 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 KLHL15Q96M94 604 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 OR11A1Q9GZK7 315 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 COQ10BQ9H8M1 238 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 SPAG4Q9NPE6 437 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 Q9UFV3 132 aa17.56■□□□□ 0.4
CLN3-225ENST00000566824 TMED7-TICAM2A0A0A6YYA0 188 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 TMEM72A0PK05 275 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 CD8B2A6NJW9 211 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 ADAMDEC1O15204 470 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 UBOX5O94941 541 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 LGI1O95970 557 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 KLK2P20151 261 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 PTGER4P35408 488 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 MSX2P35548 267 aaPredicted RBP17.55■□□□□ 0.4
CLN3-225ENST00000566824 EIF1AXP47813 144 aaKnown RBP17.55■□□□□ 0.4
CLN3-225ENST00000566824 PER3P56645 1201 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 MXRA7P84157 204 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 SELENBP1Q13228 472 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 NRF1Q16656 503 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 LRRC23Q53EV4 343 aaPredicted RBP17.55■□□□□ 0.4
CLN3-225ENST00000566824 TMEM211Q6ICI0 200 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 MRGPRGQ86SM5 289 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 LIX1LQ8IVB5 337 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 DEFB107AQ8IZN7 70 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 OR2V1Q8NHB1 315 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 C3orf49Q96BT1 292 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 CDRT15Q96T59 188 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 KCTD14Q9BQ13 255 aaPredicted RBP17.55■□□□□ 0.4
CLN3-225ENST00000566824 SRXN1Q9BYN0 137 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 ARMC7Q9H6L4 198 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 CALHM2Q9HA72 323 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 AP3M1Q9Y2T2 418 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 TMED7Q9Y3B3 224 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 HECTD1Q9ULT8 2610 aa17.55■□□□□ 0.4
CLN3-225ENST00000566824 ZC3H12DA2A288 527 aaKnown RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 MBD3L4A6NDZ8 208 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 MBD3L3A6NE82 208 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 MBD3L5A6NJ08 208 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 CXCR6O00574 342 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 FESP07332 822 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 ME2P23368 584 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 CEACAM8P31997 349 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 APOBEC1P41238 236 aaKnown RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 RGS8P57771 180 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 FOXF2Q12947 444 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 BNIP2Q12982 314 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 CYBRD1Q53TN4 286 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 HBMQ6B0K9 141 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 WBP2NLQ6ICG8 309 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 OR6T1Q8NGN1 323 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 MBD3L2Q8NHZ7 208 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 VANGL1Q8TAA9 524 aaPredicted RBP17.54■□□□□ 0.4
CLN3-225ENST00000566824 FNDC9Q8TBE3 224 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 RND1Q92730 232 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 OSTF1Q92882 214 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 SLC35B4Q969S0 331 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 UCN2Q96RP3 112 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 CD300AQ9UGN4 299 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 EGFL7Q9UHF1 273 aa17.54■□□□□ 0.4
CLN3-225ENST00000566824 A1L4Q6 167 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms