RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 DNAJC14Q6Y2X3 702 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 TMPPEQ6ZT21 453 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 CXorf67Q86X51 503 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 SLC25A43Q8WUT9 341 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 CNOT9Q92600 299 aaKnown RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 ZNF775Q96BV0 537 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 ITCHQ96J02 903 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 TACO1Q9BSH4 297 aaKnown RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 UBTD1Q9HAC8 227 aa18.45■□□□□ 0.54
CLN3-219ENST00000565778 SDR39U1Q9NRG7 319 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 SPIN1Q9Y657 262 aaPredicted RBP18.45■□□□□ 0.54
CLN3-219ENST00000565778 MED13LQ71F56 2210 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 AGAP5A6NIR3 686 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 CCNA2P20248 432 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 PSMB1P20618 241 aaKnown RBP18.44■□□□□ 0.54
CLN3-219ENST00000565778 CRATP43155 626 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 DIO1P49895 249 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 ADAM8P78325 824 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 ACKR1Q16570 336 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 BEX5Q5H9J7 111 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 EPGNQ6UW88 154 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 TFAP2EQ6VUC0 442 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 GRINAQ7Z429 371 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 WFDC8Q8IUA0 241 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 CMIPQ8IY22 773 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 MIER2Q8N344 545 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 STEAP2Q8NFT2 490 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 LRRC8CQ8TDW0 803 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 PMM1Q92871 262 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 HS3ST6Q96QI5 342 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 PSD2Q9BQI7 771 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 CCDC106Q9BWC9 280 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 OR10A4Q9H209 315 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 EXOSC3Q9NQT5 275 aaKnown RBP18.44■□□□□ 0.54
CLN3-219ENST00000565778 SLC6A13Q9NSD5 602 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 BEX4Q9NWD9 120 aaPredicted RBP18.44■□□□□ 0.54
CLN3-219ENST00000565778 CHRNA9Q9UGM1 479 aa18.44■□□□□ 0.54
CLN3-219ENST00000565778 SMAD9O15198 467 aaKnown RBP18.43■□□□□ 0.54
CLN3-219ENST00000565778 KLF4O43474 513 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 CYTIPO60759 359 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 ADAP00813 363 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 ZCCHC18P0CG32 403 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 FPR1P21462 350 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 FKBP2P26885 142 aaKnown RBP18.43■□□□□ 0.54
CLN3-219ENST00000565778 ADGRG3Q86Y34 549 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 PEX5LQ8IYB4 626 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 WDR60Q8WVS4 1066 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 VPS33AQ96AX1 596 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 DNAJA3Q96EY1 480 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 BCO1Q9HAY6 547 aa18.43■□□□□ 0.54
CLN3-219ENST00000565778 HEATR5AQ86XA9 2040 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 DBIP07108 87 aaKnown RBP18.42■□□□□ 0.54
CLN3-219ENST00000565778 FESP07332 822 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 ETFAP13804 333 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 IL32P24001 234 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 MAGEA8P43361 318 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 HTR3AP46098 478 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 RIPPLY3P57055 190 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 FOXD4Q12950 439 aaPredicted RBP18.42■□□□□ 0.54
CLN3-219ENST00000565778 TSC22D1Q15714 1073 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 C6orf10Q5SRN2 563 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 SFRP5Q5T4F7 317 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 MTDHQ86UE4 582 aaKnown RBP18.42■□□□□ 0.54
CLN3-219ENST00000565778 GABRG1Q8N1C3 465 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 OR9I1Q8NGQ6 314 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 PIGTQ969N2 578 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 ZHX1-C8orf76Q96EF9 292 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 ATP6V1G3Q96LB4 118 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 C7orf26Q96N11 449 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 TPT1P8Q9HAU6 139 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 P2RX2Q9UBL9 471 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 ING1Q9UK53 422 aaPredicted RBP18.42■□□□□ 0.54
CLN3-219ENST00000565778 ITPR3Q14573 2671 aa18.42■□□□□ 0.54
CLN3-219ENST00000565778 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 FAM234BA2RU67 622 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 AP3D1O14617 1153 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 ADAM11O75078 769 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 GCM2O75603 506 aaPredicted RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 LOXP28300 417 aaPredicted RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 CLK1P49759 484 aaKnown RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 STX1BP61266 288 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 NKX6-1P78426 367 aaPredicted RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 PLAURQ03405 335 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 MSANTD1Q6ZTZ1 278 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 DYDC1Q8WWB3 177 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 S100PBPQ96BU1 408 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 PLPPR2Q96GM1 343 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 ARL5BQ96KC2 179 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 ZNF300Q96RE9 604 aaPredicted RBP18.41■□□□□ 0.54
CLN3-219ENST00000565778 SLCO1B3Q9NPD5 702 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 CALML5Q9NZT1 146 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 HDGFL3Q9Y3E1 203 aa18.41■□□□□ 0.54
CLN3-219ENST00000565778 MAP1AP78559 2803 aaPredicted RBP18.4■□□□□ 0.54
CLN3-219ENST00000565778 TMED7-TICAM2A0A0A6YYA0 188 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 ZNF724A8MTY0 619 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 ZNF814B7Z6K7 855 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 POLR3GO15318 223 aaPredicted RBP18.4■□□□□ 0.54
CLN3-219ENST00000565778 SMPD2O60906 423 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 TGDSO95455 350 aa18.4■□□□□ 0.54
CLN3-219ENST00000565778 UQCRBP14927 111 aa18.4■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms