RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ZP1P60852 638 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 COL13A1Q5TAT6 717 aaPredicted RBP12.21□□□□□ -0.45
CLN3-210ENST00000563874 VN1R4Q7Z5H5 301 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 GLRX5Q86SX6 157 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 ASPGQ86U10 573 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 COMMD7Q86VX2 200 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 RPLP0P6Q8NHW5 317 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 ADAMTS14Q8WXS8 1223 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 SORCS2Q96PQ0 1159 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 OR14A2Q96R54 314 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 PDCD1LG2Q9BQ51 273 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 TEX101Q9BY14 249 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 METTL17Q9H7H0 456 aaPredicted RBP12.21□□□□□ -0.45
CLN3-210ENST00000563874 DLL4Q9NR61 685 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 OR6C2Q9NZP2 312 aa12.21□□□□□ -0.45
CLN3-210ENST00000563874 LRRN3E7EW58 273 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 PRICKLE3O43900 615 aaPredicted RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 LDB3O75112 727 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 BMP8BP34820 402 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 MMP15P51511 669 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 CEBPEQ15744 281 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 ARHGAP11BQ3KRB8 267 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 C4orf46Q504U0 113 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 TMEM255AQ5JRV8 349 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 DMKNQ6E0U4 476 aaPredicted RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 ZC3H14Q6PJT7 736 aaKnown RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 BMP8AQ7Z5Y6 402 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 SERPINA12Q8IW75 414 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 SRFBP1Q8NEF9 429 aaKnown RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 LGALS14Q8TCE9 139 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 TNFRSF13CQ96RJ3 184 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 CLEC4MQ9H2X3 399 aaPredicted RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 LRRN3Q9H3W5 708 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 DCAF16Q9NXF7 216 aa12.21□□□□□ -0.46
CLN3-210ENST00000563874 PPIEQ9UNP9 301 aaKnown RBP12.21□□□□□ -0.46
CLN3-210ENST00000563874 TBC1D3KA0A087X1G2 549 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 A0A1W2PP55 124 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 TBC1D3FA6NER0 549 aaPredicted RBP12.2□□□□□ -0.46
CLN3-210ENST00000563874 FAM25EA8MYX2 175 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 GMDSO60547 372 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 RNGTTO60942 597 aaKnown RBP12.2□□□□□ -0.46
CLN3-210ENST00000563874 RCBTB2O95199 551 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 MAT2AP31153 395 aaKnown RBP12.2□□□□□ -0.46
CLN3-210ENST00000563874 DUSP8Q13202 625 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 STK11Q15831 433 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 AGBL4Q5VU57 503 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 TBC1D3GQ6DHY5 549 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 CDK20Q8IZL9 346 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 HDAC8Q9BY41 377 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 B3GNT4Q9C0J1 378 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 MRPL39Q9NYK5 338 aaKnown RBP12.2□□□□□ -0.46
CLN3-210ENST00000563874 ZNF224Q9NZL3 707 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 SLC35A3Q9Y2D2 325 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 CHD9Q3L8U1 2897 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 LRRC72A6NJI9 287 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 B8ZZF3 427 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 PSMD9O00233 223 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 FLRT2O43155 660 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 CMPK1P30085 196 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 CTNNB1P35222 781 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 GDNFP39905 211 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 PSMB10P40306 273 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 NRG3P56975 720 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 POU6F2P78424 691 aaPredicted RBP12.2□□□□□ -0.46
CLN3-210ENST00000563874 HSF2Q03933 536 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 RPE65Q16518 533 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 DCST2Q5T1A1 773 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 LINGO2Q7L985 606 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 MFSD9Q8NBP5 474 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 SDR9C7Q8NEX9 313 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 OR4K14Q8NGD5 310 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 OR4K13Q8NH42 304 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 TOX2Q96NM4 488 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 PTCHD1Q96NR3 888 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 C1QTNF6Q9BXI9 259 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 RBCK1Q9BYM8 510 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 TMEM168Q9H0V1 697 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 RCE1Q9Y256 329 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 MED31Q9Y3C7 131 aa12.2□□□□□ -0.46
CLN3-210ENST00000563874 MEIKINA0A087WXM9 373 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 CARNS1A5YM72 827 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 TFP02787 698 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SULT1A3P0DMM9 295 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 SULT1A4P0DMN0 295 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PTHLHP12272 177 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 PEPDP12955 493 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 GDI2P50395 445 aaKnown RBP12.19□□□□□ -0.46
CLN3-210ENST00000563874 ARFIP1P53367 373 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 CLDN12P56749 244 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 COL28A1Q2UY09 1125 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 EIPR1Q53HC9 387 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 HES5Q5TA89 166 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 GARNL3Q5VVW2 1013 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 IDO2Q6ZQW0 420 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 Q6ZTK2 550 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 OR2L13Q8N349 312 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 FTMTQ8N4E7 242 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 TOR1AIP2Q8NFQ8 470 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 NXPE2Q96DL1 559 aa12.19□□□□□ -0.46
CLN3-210ENST00000563874 RBP7Q96R05 134 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms