RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 MYOCOSA0A1B0GUC4 107 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 A0A1W2PQM1 296 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 A8MU76 341 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 BHLHE40O14503 412 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 SEC14L5O43304 696 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TSPAN2O60636 221 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TPST2O60704 377 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 OR7A10O76100 309 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 SERPINA3P01011 423 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 IGHA1P01876 353 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 HLA-DPB1P04440 258 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 RAB40ALP0C0E4 278 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TSPAN19P0C672 248 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 F8A1P23610 371 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 CXCR1P25024 350 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 HTR2AP28223 471 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ABCD3P28288 659 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ADH6P28332 368 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 GABRA5P31644 462 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 EVI2BP34910 448 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 APOBEC1P41238 236 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 EIF1P41567 113 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 GPR4P46093 362 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 RFX3P48380 749 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 RNF4P78317 190 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 CRYZQ08257 329 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 ZNF846Q147U1 533 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 MED22Q15528 200 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ARMCX4Q5H9R4 360 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 AADACL4Q5VUY2 407 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ZNF544Q6NX49 715 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 PAPD4Q6PIY7 484 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 C19orf48Q6RUI8 117 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TSSK4Q6SA08 328 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 OPN5Q6U736 354 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 MEPCEQ7L2J0 689 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 CXXC5Q7LFL8 322 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 MAMDC2Q7Z304 686 aaPredicted RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 PRICKLE2Q7Z3G6 844 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 KCTD20Q7Z5Y7 419 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ANKRD37Q7Z713 158 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ATG4DQ86TL0 474 aaPredicted RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 GATAD2AQ86YP4 633 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NKAIN4Q8IVV8 208 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 MAML2Q8IZL2 1156 aaPredicted RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 ABCA7Q8IZY2 2146 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 CADM2Q8N3J6 435 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ACBD7Q8N6N7 88 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NANOGP1Q8N7R0 232 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ZNF248Q8NDW4 579 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 M1APQ8TC57 530 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 FNDC8Q8TC99 324 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 SLC25A43Q8WUT9 341 aaPredicted RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 PHYHIPQ92561 330 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 CNOT9Q92600 299 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 C3orf49Q96BT1 292 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ZG16BQ96DA0 208 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 LGALS12Q96DT0 336 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 OMA1Q96E52 524 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 LIN37Q96GY3 246 aaPredicted RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 DACH2Q96NX9 599 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 ASPNQ9BXN1 380 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NXF5Q9H1B4 397 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 ANKRA2Q9H9E1 313 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TRIM36Q9NQ86 728 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NANSQ9NR45 359 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 SERINC1Q9NRX5 453 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 RXFP3Q9NSD7 469 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NDUFB11Q9NX14 153 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TNFRSF10DQ9UBN6 386 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 STUB1Q9UNE7 303 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 POLHQ9Y253 713 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 EXOGQ9Y2C4 368 aaKnown RBP6.9□□□□□ -1.3
VPS39-204ENST00000561818 HIF3AQ9Y2N7 669 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 NPFFR2Q9Y5X5 522 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 PEX16Q9Y5Y5 336 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 TMEM14AQ9Y6G1 99 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 U3KQA8 63 aa6.9□□□□□ -1.3
VPS39-204ENST00000561818 XIRP2A4UGR9 3374 aa6.9□□□□□ -1.31
VPS39-204ENST00000561818 TRAV36DV7A0A075B6V5 113 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 IGLV3-32A0A0A0MS00 114 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ANKUB1A6NFN9 424 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 A8MVM7 634 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CENPBD1B2RD01 187 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 C21orf140B9A014 251 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CLDN25C9JDP6 229 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TGFBR3LH3BV60 316 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TAF4O00268 1085 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PLD2O14939 933 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 ZNF208O43345 1280 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 HCRTR2O43614 444 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 PRKYO43930 277 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 DNAJB6O75190 326 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 MED26O95402 600 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 IL1AP01583 271 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 MT-ND5P03915 603 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 CLPSP04118 112 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 TP53P04637 393 aaPredicted RBP6.89□□□□□ -1.31
VPS39-204ENST00000561818 CD1AP06126 327 aa6.89□□□□□ -1.31
VPS39-204ENST00000561818 OR2T7P0C7T2 308 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms