RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 SRSF3P84103 164 aaKnown RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 SPIBQ01892 262 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 EPS8Q12929 822 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 FOXF1Q12946 379 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 MFAP5Q13361 173 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PIN1Q13526 163 aaPredicted RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 EFR3AQ14156 821 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 GNA13Q14344 377 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 LARS2Q15031 903 aaKnown RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 TBR1Q16650 682 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 COL28A1Q2UY09 1125 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 SPATS1Q496A3 300 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 ABHD17BQ5VST6 288 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 RNF220Q5VTB9 566 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 AGAP7PQ5VUJ5 663 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PRAMEF8Q5VWM4 474 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PRAMEF7Q5VXH5 474 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 LPCAT4Q643R3 524 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 INO80CQ6PI98 192 aaPredicted RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 ARSKQ6UWY0 536 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 WDR88Q6ZMY6 472 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 LCNL1Q6ZST4 164 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PLEKHM3Q6ZWE6 761 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 C1QL4Q86Z23 238 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 EPHX4Q8IUS5 362 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 SLC30A8Q8IWU4 369 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 CADM2Q8N3J6 435 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 WDSUB1Q8N9V3 476 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 ICA1LQ8NDH6 482 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PSD4Q8NDX1 1056 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 MDS2Q8NDY4 140 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 FAM71CQ8NEG0 241 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 C7orf57Q8NEG2 295 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 DUSP19Q8WTR2 217 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PHF10Q8WUB8 498 aaKnown RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 TMEM255BQ8WV15 326 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 RNF138Q8WVD3 245 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 NRG4Q8WWG1 115 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 GEMIN6Q8WXD5 167 aaKnown RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 PROX1Q92786 737 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 STMN2Q93045 179 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 VPS50Q96JG6 964 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 ZNF354BQ96LW1 612 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 AGAP4Q96P64 663 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 IP6K3Q96PC2 410 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 TM9SF2Q99805 663 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 PINK1Q9BXM7 581 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 MTHFD2LQ9H903 347 aaPredicted RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 ZNF71Q9NQZ8 489 aaPredicted RBP4.74□□□□□ -1.65
SPG11-220ENST00000559933 POLE3Q9NRF9 147 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 UBQLN4Q9NRR5 601 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 MAN2C1Q9NTJ4 1040 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 CALML5Q9NZT1 146 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 NDUFAF4Q9P032 175 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 LRFN1Q9P244 771 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 DKK4Q9UBT3 224 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 RIMS3Q9UJD0 308 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 RPS6KA6Q9UK32 745 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 TP53TG5Q9Y2B4 290 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 AP4S1Q9Y587 144 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 WIF1Q9Y5W5 379 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 U3KQV3 271 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 MED12Q93074 2177 aa4.74□□□□□ -1.65
SPG11-220ENST00000559933 HEATR5AQ86XA9 2040 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 MAP1BP46821 2468 aaKnown RBP4.73□□□□□ -1.65
SPG11-220ENST00000559933 NINQ8N4C6 2090 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 USP24Q9UPU5 2620 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 A0A087WV48 116 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 TRBV4-1A0A0J9YWV2 114 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 A0A1B0GWA3 101 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 OR5H15A6NDH6 313 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 TTC36A6NLP5 189 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 ALG1L2C9J202 215 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 PDLIM1O00151 329 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 KPNA4O00629 521 aaPredicted RBP4.73□□□□□ -1.65
SPG11-220ENST00000559933 ZNF264O43296 627 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 MGRN1O60291 552 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 SERPINB7O75635 380 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 CEACAM4O75871 244 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 PRSS23O95084 383 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 ZNF205O95201 554 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 LYPD3O95274 346 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 LGI1O95970 557 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 CST1P01037 141 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 IFNW1P05000 195 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 GPIP06744 558 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 NGFRP08138 427 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 RAP2AP10114 183 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 ANPEPP15144 967 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 FUT1P19526 365 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 PEX2P28328 305 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 SHC1P29353 583 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 RRM2P31350 389 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 MAGEA2P43356 314 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 IDH2P48735 452 aaKnown RBP4.73□□□□□ -1.65
SPG11-220ENST00000559933 CYB561P49447 251 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 TMED10P49755 219 aaKnown RBP4.73□□□□□ -1.65
SPG11-220ENST00000559933 MEOX1P50221 254 aa4.73□□□□□ -1.65
SPG11-220ENST00000559933 PSMD4P55036 377 aaKnown RBP4.73□□□□□ -1.65
SPG11-220ENST00000559933 CDH12P55289 794 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms