RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NIPAL1Q6NVV3 410 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RWDD4Q6NW29 188 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TTC23LQ6PF05 361 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 C9orf40Q8IXQ3 194 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC7A5P1Q8MH63 180 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CHCHD4Q8N4Q1 142 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CCDC71LQ8N9Z2 235 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SPERTQ8NA61 448 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 OR6M1Q8NGM8 313 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 OR4L1Q8NH43 312 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CCDC110Q8TBZ0 833 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RDH11Q8TC12 318 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ACMSDQ8TDX5 336 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 PYROXD1Q8WU10 500 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SCFD1Q8WVM8 642 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 NELFBQ8WX92 580 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 PAGE5Q96GU1 130 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CCDC42Q96M95 316 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 IL4I1Q96RQ9 567 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ECSITQ9BQ95 431 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC39A3Q9BRY0 314 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TBC1D10AQ9BXI6 508 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RSPO3Q9BXY4 272 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CRNKL1Q9BZJ0 848 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 DRC3Q9H069 523 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SLC26A1Q9H2B4 701 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 GLIPR2Q9H4G4 154 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ALG9Q9H6U8 611 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 PALMDQ9NP74 551 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 NRN1Q9NPD7 142 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 TMEM161AQ9NX61 479 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 UVRAGQ9P2Y5 699 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 RABL2AQ9UBK7 228 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF282Q9UDV7 671 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 ZMAT5Q9UDW3 170 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 LEF1Q9UJU2 399 aaPredicted RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 FBXL5Q9UKA1 691 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 PRELID1Q9Y255 219 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 SNX5Q9Y5X3 404 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CACNG2Q9Y698 323 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 USH1CQ9Y6N9 552 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 MRC1P22897 1456 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 DIP2AQ14689 1571 aa2.43□□□□□ -2.02
VPS13C-208ENST00000559119 CLTCQ00610 1675 aaKnown RBP2.43□□□□□ -2.02
VPS13C-208ENST00000559119 FRMPD4Q14CM0 1322 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 DISP2A7MBM2 1401 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ARHGAP5Q13017 1502 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ARAP3Q8WWN8 1544 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 NID2Q14112 1375 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 PALLDQ8WX93 1383 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 IGKV1D-17A0A075B6S4 117 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TRBV6-6A0A0A6YYG2 114 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 FUOMA2VDF0 154 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 FAM149AA5PLN7 773 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 FAM25EA8MYX2 175 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 E7EWF7 191 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 E9PMD0 336 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF701M0R085 212 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 EI24O14681 340 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ZNF263O14978 683 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 PFDN6O15212 129 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 POLR2DO15514 142 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 DENRO43583 198 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 RANBP6O60518 1105 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ICOSLGO75144 302 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 OXSR1O95747 527 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 GAS8O95995 478 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 SHBGP04278 402 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 CD5P06127 495 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 UQCRBP14927 111 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ANXA13P27216 316 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 GNA11P29992 359 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 HMOX2P30519 316 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 CA8P35219 290 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 PHBP35232 272 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 SERPINB6P35237 376 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ATP6V1E1P36543 226 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 LONP1P36776 959 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ACVR1BP36896 505 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MAGEA1P43355 309 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 KCNJ1P48048 391 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 POU3F4P49335 361 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TNFSF10P50591 281 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 GPC3P51654 580 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 HNRNPFP52597 415 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 HAND2P61296 217 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 RPS4XP62701 263 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 BASP1P80723 227 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 YWHAHQ04917 246 aaPredicted RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 PUDPQ08623 228 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MED21Q13503 144 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 ELAVL3Q14576 367 aaKnown RBP2.42□□□□□ -2.02
VPS13C-208ENST00000559119 TGFBIQ15582 683 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 SMU1Q2TAY7 513 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 C2orf76Q3KRA6 126 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MPPE1Q53F39 396 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 CCNJQ5T5M9 372 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 LGSNQ5TDP6 509 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 MEDAGQ5VYS4 303 aa2.42□□□□□ -2.02
VPS13C-208ENST00000559119 DUPD1Q68J44 220 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms