RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 ADAMDEC1O15204 470 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 CXCL13O43927 109 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 SERPINB7O75635 380 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 DCTN3O75935 186 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 RCBTB2O95199 551 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 TMIGD3P0DMS9 266 aaPredicted RBP11.1□□□□□ -0.63
SMAD3-205ENST00000558428 CTSSP25774 331 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 PRDX6P30041 224 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 SLC7A1P30825 629 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 APOBEC1P41238 236 aaKnown RBP11.1□□□□□ -0.63
SMAD3-205ENST00000558428 NUDT2P50583 147 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 GZMMP51124 257 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 ZNF136P52737 540 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 DLX5P56178 289 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 PCBP3P57721 371 aaKnown RBP11.1□□□□□ -0.63
SMAD3-205ENST00000558428 COPZ1P61923 177 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 VMACQ2NL98 169 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 INTS11Q5TA45 600 aaKnown RBP11.1□□□□□ -0.63
SMAD3-205ENST00000558428 HBMQ6B0K9 141 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 DHRS4L2Q6PKH6 230 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 ARPINQ7Z6K5 226 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 ARMC8Q8IUR7 673 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 LIX1LQ8IVB5 337 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 SLC30A8Q8IWU4 369 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 FNDC9Q8TBE3 224 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 INTS12Q96CB8 462 aaKnown RBP11.1□□□□□ -0.63
SMAD3-205ENST00000558428 LRRC37BQ96QE4 947 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 PRRG4Q9BZD6 226 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 EFCAB1Q9HAE3 211 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 ADAM21Q9UKJ8 722 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 ZNF175Q9Y473 711 aa11.1□□□□□ -0.63
SMAD3-205ENST00000558428 A0A1W2PNR3 127 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 FRS3O43559 492 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SHOX2O60902 331 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SYNGR4O95473 234 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 FAM107AO95990 144 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 OPN1SWP03999 348 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 FCGR2AP12318 317 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 PRG2P13727 222 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 BMP5P22003 454 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 COL8A1P27658 744 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 GRNP28799 593 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 ACAA2P42765 397 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SLC1A3P43003 542 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 HTR3AP46098 478 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 AGFG1P52594 562 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 CARD18P57730 90 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 DMTNQ08495 405 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SLC25A35Q3KQZ1 300 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 GLIPR1L2Q4G1C9 344 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 GKAP1Q5VSY0 366 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 HIST2H2BCQ6DN03 193 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 ERICH5Q6P6B1 374 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 PATL1Q86TB9 770 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 CALHM3Q86XJ0 350 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 GCNT2Q8N0V5 402 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 CADM2Q8N3J6 435 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SMYD1Q8NB12 490 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 BHLHE22Q8NFJ8 381 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 OSTF1Q92882 214 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SLC35B4Q969S0 331 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 REXO5Q96IC2 774 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 ZNF583Q96ND8 569 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 ZFP3Q96NJ6 502 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 OR5B2Q96R09 309 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 HOPXQ9BPY8 73 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 GPATCH1Q9BRR8 931 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 RSPO3Q9BXY4 272 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 COQ10BQ9H8M1 238 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 KCNJ16Q9NPI9 418 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 TIGARQ9NQ88 270 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 ZNF629Q9UEG4 869 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 CHRNA9Q9UGM1 479 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SLC13A4Q9UKG4 626 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 MCTS1Q9ULC4 181 aaKnown RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 USP22Q9UPT9 525 aa11.09□□□□□ -0.63
SMAD3-205ENST00000558428 SPIN1Q9Y657 262 aaPredicted RBP11.09□□□□□ -0.63
SMAD3-205ENST00000558428 TMED7-TICAM2A0A0A6YYA0 188 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 CCT8L1PA6NM43 557 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 FAM220BPB1ANY3 271 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 M0QX08 132 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 TPST1O60507 370 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 GCM2O75603 506 aaPredicted RBP11.08□□□□□ -0.64
SMAD3-205ENST00000558428 MFN2O95140 757 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 TFPIP10646 304 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 CCNA2P20248 432 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 TACR3P29371 465 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 OPRM1P35372 400 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 CPA2P48052 419 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 POLR2HP52434 150 aaKnown RBP11.08□□□□□ -0.64
SMAD3-205ENST00000558428 HOXC5Q00444 222 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 FOXF2Q12947 444 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 SYT14P1Q58G82 188 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 WBP2NLQ6ICG8 309 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 OR2A2Q6IF42 318 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 HACD2Q6Y1H2 254 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 COMTD1Q86VU5 262 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 ADGRG3Q86Y34 549 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 ANKS4BQ8N8V4 417 aa11.08□□□□□ -0.64
SMAD3-205ENST00000558428 RELL2Q8NC24 303 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms